Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 34632 | 0.66 | 0.587125 |
Target: 5'- uUCGCCGUucgcgucgacgagGcgCGCCgGCUUGcCGGUu -3' miRNA: 3'- uAGCGGCG-------------CaaGUGGaCGAACaGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 4656 | 0.66 | 0.577126 |
Target: 5'- gAUCGCCcccgGCG-UCGCUUGCaUGcggggCGGCu -3' miRNA: 3'- -UAGCGG----CGCaAGUGGACGaACa----GCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 23780 | 0.66 | 0.577126 |
Target: 5'- -aCGCCGCGacgagcaugUCGCCcGCgaaGcCGGCg -3' miRNA: 3'- uaGCGGCGCa--------AGUGGaCGaa-CaGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 28305 | 0.66 | 0.566062 |
Target: 5'- cGUCGUgGCGacUugUUGCUggaagccuguUGUCGGCg -3' miRNA: 3'- -UAGCGgCGCaaGugGACGA----------ACAGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 3400 | 0.66 | 0.566062 |
Target: 5'- uUCGCCGCGcgCuACCgcugGCagGgCGGCu -3' miRNA: 3'- uAGCGGCGCaaG-UGGa---CGaaCaGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 38011 | 0.66 | 0.566062 |
Target: 5'- -gCGCCgGCGUcgaUCAguuCCUGCggcaUGUcCGGCa -3' miRNA: 3'- uaGCGG-CGCA---AGU---GGACGa---ACA-GCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 37743 | 0.66 | 0.566062 |
Target: 5'- -gCGCCGCGgcgagCAUCUGUUgcaucUGcgCGGCc -3' miRNA: 3'- uaGCGGCGCaa---GUGGACGA-----ACa-GCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 33765 | 0.66 | 0.555053 |
Target: 5'- cUCGCCaGCGUcgaacgaaACCUGCUg--CGGUg -3' miRNA: 3'- uAGCGG-CGCAag------UGGACGAacaGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 29281 | 0.66 | 0.544108 |
Target: 5'- -gCGCCGCGUUCcacggAUCgGCcUUGUacgCGGCg -3' miRNA: 3'- uaGCGGCGCAAG-----UGGaCG-AACA---GCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 22991 | 0.66 | 0.544108 |
Target: 5'- cGUCGCCGCacgcgUCugCUGCgcgagcaugGUCaGCu -3' miRNA: 3'- -UAGCGGCGca---AGugGACGaa-------CAGcCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 39419 | 0.66 | 0.544108 |
Target: 5'- -gUGCCGCGgcgcuugCGCa-GCUUGgCGGCg -3' miRNA: 3'- uaGCGGCGCaa-----GUGgaCGAACaGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 8397 | 0.66 | 0.543018 |
Target: 5'- -aCGCCGCacgcgacGUgcUCGCCgaGCgccGUCGGCa -3' miRNA: 3'- uaGCGGCG-------CA--AGUGGa-CGaa-CAGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 29373 | 0.66 | 0.533235 |
Target: 5'- -gUGCCGCGggUCGCC-GCU--UCGGUc -3' miRNA: 3'- uaGCGGCGCa-AGUGGaCGAacAGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 4620 | 0.66 | 0.533235 |
Target: 5'- cUCGCCGCGg-CGCCggugGCc-GcCGGCg -3' miRNA: 3'- uAGCGGCGCaaGUGGa---CGaaCaGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 25115 | 0.67 | 0.522439 |
Target: 5'- -aCGCCGcCGUacgcgaUCGugucccacacgcCCUGCUUGcgCGGCg -3' miRNA: 3'- uaGCGGC-GCA------AGU------------GGACGAACa-GCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 24571 | 0.67 | 0.522439 |
Target: 5'- gAUCGCCGUcagcuucaCACCUGCgcaUGgguucgCGGCg -3' miRNA: 3'- -UAGCGGCGcaa-----GUGGACGa--ACa-----GCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 12060 | 0.67 | 0.501112 |
Target: 5'- -gCGCCGCG--CugCaGCagGUCGGCa -3' miRNA: 3'- uaGCGGCGCaaGugGaCGaaCAGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 26634 | 0.67 | 0.500055 |
Target: 5'- cUCGCCGCGUUCaugGCCUcgaucggGCUgucGUCGa- -3' miRNA: 3'- uAGCGGCGCAAG---UGGA-------CGAa--CAGCcg -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 14542 | 0.67 | 0.499 |
Target: 5'- --aGCCGCuaucuauucccUCGCCUGC--GUCGGCg -3' miRNA: 3'- uagCGGCGca---------AGUGGACGaaCAGCCG- -5' |
|||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 21228 | 0.67 | 0.490592 |
Target: 5'- uUCGUgGCGUUggcgagCACCgUGUUUG-CGGCg -3' miRNA: 3'- uAGCGgCGCAA------GUGG-ACGAACaGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home