miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28024 5' -56.3 NC_005887.1 + 34632 0.66 0.587125
Target:  5'- uUCGCCGUucgcgucgacgagGcgCGCCgGCUUGcCGGUu -3'
miRNA:   3'- uAGCGGCG-------------CaaGUGGaCGAACaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 4656 0.66 0.577126
Target:  5'- gAUCGCCcccgGCG-UCGCUUGCaUGcggggCGGCu -3'
miRNA:   3'- -UAGCGG----CGCaAGUGGACGaACa----GCCG- -5'
28024 5' -56.3 NC_005887.1 + 23780 0.66 0.577126
Target:  5'- -aCGCCGCGacgagcaugUCGCCcGCgaaGcCGGCg -3'
miRNA:   3'- uaGCGGCGCa--------AGUGGaCGaa-CaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 28305 0.66 0.566062
Target:  5'- cGUCGUgGCGacUugUUGCUggaagccuguUGUCGGCg -3'
miRNA:   3'- -UAGCGgCGCaaGugGACGA----------ACAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 3400 0.66 0.566062
Target:  5'- uUCGCCGCGcgCuACCgcugGCagGgCGGCu -3'
miRNA:   3'- uAGCGGCGCaaG-UGGa---CGaaCaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 38011 0.66 0.566062
Target:  5'- -gCGCCgGCGUcgaUCAguuCCUGCggcaUGUcCGGCa -3'
miRNA:   3'- uaGCGG-CGCA---AGU---GGACGa---ACA-GCCG- -5'
28024 5' -56.3 NC_005887.1 + 37743 0.66 0.566062
Target:  5'- -gCGCCGCGgcgagCAUCUGUUgcaucUGcgCGGCc -3'
miRNA:   3'- uaGCGGCGCaa---GUGGACGA-----ACa-GCCG- -5'
28024 5' -56.3 NC_005887.1 + 33765 0.66 0.555053
Target:  5'- cUCGCCaGCGUcgaacgaaACCUGCUg--CGGUg -3'
miRNA:   3'- uAGCGG-CGCAag------UGGACGAacaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 29281 0.66 0.544108
Target:  5'- -gCGCCGCGUUCcacggAUCgGCcUUGUacgCGGCg -3'
miRNA:   3'- uaGCGGCGCAAG-----UGGaCG-AACA---GCCG- -5'
28024 5' -56.3 NC_005887.1 + 22991 0.66 0.544108
Target:  5'- cGUCGCCGCacgcgUCugCUGCgcgagcaugGUCaGCu -3'
miRNA:   3'- -UAGCGGCGca---AGugGACGaa-------CAGcCG- -5'
28024 5' -56.3 NC_005887.1 + 39419 0.66 0.544108
Target:  5'- -gUGCCGCGgcgcuugCGCa-GCUUGgCGGCg -3'
miRNA:   3'- uaGCGGCGCaa-----GUGgaCGAACaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 8397 0.66 0.543018
Target:  5'- -aCGCCGCacgcgacGUgcUCGCCgaGCgccGUCGGCa -3'
miRNA:   3'- uaGCGGCG-------CA--AGUGGa-CGaa-CAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 29373 0.66 0.533235
Target:  5'- -gUGCCGCGggUCGCC-GCU--UCGGUc -3'
miRNA:   3'- uaGCGGCGCa-AGUGGaCGAacAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 4620 0.66 0.533235
Target:  5'- cUCGCCGCGg-CGCCggugGCc-GcCGGCg -3'
miRNA:   3'- uAGCGGCGCaaGUGGa---CGaaCaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 25115 0.67 0.522439
Target:  5'- -aCGCCGcCGUacgcgaUCGugucccacacgcCCUGCUUGcgCGGCg -3'
miRNA:   3'- uaGCGGC-GCA------AGU------------GGACGAACa-GCCG- -5'
28024 5' -56.3 NC_005887.1 + 24571 0.67 0.522439
Target:  5'- gAUCGCCGUcagcuucaCACCUGCgcaUGgguucgCGGCg -3'
miRNA:   3'- -UAGCGGCGcaa-----GUGGACGa--ACa-----GCCG- -5'
28024 5' -56.3 NC_005887.1 + 12060 0.67 0.501112
Target:  5'- -gCGCCGCG--CugCaGCagGUCGGCa -3'
miRNA:   3'- uaGCGGCGCaaGugGaCGaaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 26634 0.67 0.500055
Target:  5'- cUCGCCGCGUUCaugGCCUcgaucggGCUgucGUCGa- -3'
miRNA:   3'- uAGCGGCGCAAG---UGGA-------CGAa--CAGCcg -5'
28024 5' -56.3 NC_005887.1 + 14542 0.67 0.499
Target:  5'- --aGCCGCuaucuauucccUCGCCUGC--GUCGGCg -3'
miRNA:   3'- uagCGGCGca---------AGUGGACGaaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 21228 0.67 0.490592
Target:  5'- uUCGUgGCGUUggcgagCACCgUGUUUG-CGGCg -3'
miRNA:   3'- uAGCGgCGCAA------GUGG-ACGAACaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.