Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 39478 | 0.68 | 0.46987 |
Target: 5'- cGUCGCCugcGCGUUauccacCGCCUGCggcauugggaUGUCGGg -3' miRNA: 3'- -UAGCGG---CGCAA------GUGGACGa---------ACAGCCg -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 37944 | 0.68 | 0.46987 |
Target: 5'- gAUCGCCGCGccUUCGCCggcgcgcauUGcCUUGUUcaacgGGCu -3' miRNA: 3'- -UAGCGGCGC--AAGUGG---------AC-GAACAG-----CCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 34460 | 0.68 | 0.420133 |
Target: 5'- gAUCGUCGCcg--GCCUGCUcGUCGGa -3' miRNA: 3'- -UAGCGGCGcaagUGGACGAaCAGCCg -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 30738 | 0.68 | 0.420133 |
Target: 5'- -gCGCaCGCucugCACCUGCgUGUCGaGCg -3' miRNA: 3'- uaGCG-GCGcaa-GUGGACGaACAGC-CG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 40161 | 0.68 | 0.449603 |
Target: 5'- cUCGCCGCGUgugAgCUGCgcGaCGGCa -3' miRNA: 3'- uAGCGGCGCAag-UgGACGaaCaGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 9245 | 0.68 | 0.429827 |
Target: 5'- -gCGCCGCGUcggcgaucgcgUCuAUCUGUgcacggcgGUCGGCa -3' miRNA: 3'- uaGCGGCGCA-----------AG-UGGACGaa------CAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 40865 | 0.69 | 0.382718 |
Target: 5'- -gCGCCGCGcgagCGCCgcacGCc-GUCGGCg -3' miRNA: 3'- uaGCGGCGCaa--GUGGa---CGaaCAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 32656 | 0.69 | 0.401148 |
Target: 5'- gAUCGCUGag-UCAucggUCUGCUgGUCGGCg -3' miRNA: 3'- -UAGCGGCgcaAGU----GGACGAaCAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 4227 | 0.69 | 0.401148 |
Target: 5'- cAUCGCCGCGguugUUuuCCUGCUcgcgaUGgagcaCGGCa -3' miRNA: 3'- -UAGCGGCGCa---AGu-GGACGA-----ACa----GCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 25499 | 0.69 | 0.410572 |
Target: 5'- -gCGCCGCGguaCACCUcGCggaugaUGUCGcGCu -3' miRNA: 3'- uaGCGGCGCaa-GUGGA-CGa-----ACAGC-CG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 8181 | 0.69 | 0.373717 |
Target: 5'- -aCGUCGuCGUUUACggGCcUGUCGGCu -3' miRNA: 3'- uaGCGGC-GCAAGUGgaCGaACAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 27201 | 0.69 | 0.373717 |
Target: 5'- -aUGCCGuCGagCGCCUGCaugggGUCGGUc -3' miRNA: 3'- uaGCGGC-GCaaGUGGACGaa---CAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 37162 | 0.69 | 0.391863 |
Target: 5'- gAUCaGCCGCuucacGUUCuCCUGC--GUCGGCu -3' miRNA: 3'- -UAG-CGGCG-----CAAGuGGACGaaCAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 35212 | 0.69 | 0.410572 |
Target: 5'- uUCGuuGCGca-GCa-GCUUGUCGGCc -3' miRNA: 3'- uAGCggCGCaagUGgaCGAACAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 19119 | 0.7 | 0.339171 |
Target: 5'- -cCGCCGcCGcUCGCgUGCc-GUCGGCg -3' miRNA: 3'- uaGCGGC-GCaAGUGgACGaaCAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 33532 | 0.7 | 0.35615 |
Target: 5'- gAUCaCCGUGagCGCCUGCUUcugGUCGGg -3' miRNA: 3'- -UAGcGGCGCaaGUGGACGAA---CAGCCg -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 8108 | 0.7 | 0.35615 |
Target: 5'- cUCGCCGCGcUCGCCgagGCgccgcUGuUCGGg -3' miRNA: 3'- uAGCGGCGCaAGUGGa--CGa----AC-AGCCg -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 34575 | 0.7 | 0.322788 |
Target: 5'- gAUCGUCGCGUUCACgUaGCa-GcCGGCg -3' miRNA: 3'- -UAGCGGCGCAAGUGgA-CGaaCaGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 23748 | 0.71 | 0.299334 |
Target: 5'- uAUCGCUGCGcgUCACUuuccacagcgaUGCUUGUuccaUGGCa -3' miRNA: 3'- -UAGCGGCGCa-AGUGG-----------ACGAACA----GCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 37351 | 0.72 | 0.263215 |
Target: 5'- gGUCGCCGCau---CCUGCUUuuuugcagcGUCGGCu -3' miRNA: 3'- -UAGCGGCGcaaguGGACGAA---------CAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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