miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28024 5' -56.3 NC_005887.1 + 39478 0.68 0.46987
Target:  5'- cGUCGCCugcGCGUUauccacCGCCUGCggcauugggaUGUCGGg -3'
miRNA:   3'- -UAGCGG---CGCAA------GUGGACGa---------ACAGCCg -5'
28024 5' -56.3 NC_005887.1 + 37944 0.68 0.46987
Target:  5'- gAUCGCCGCGccUUCGCCggcgcgcauUGcCUUGUUcaacgGGCu -3'
miRNA:   3'- -UAGCGGCGC--AAGUGG---------AC-GAACAG-----CCG- -5'
28024 5' -56.3 NC_005887.1 + 34460 0.68 0.420133
Target:  5'- gAUCGUCGCcg--GCCUGCUcGUCGGa -3'
miRNA:   3'- -UAGCGGCGcaagUGGACGAaCAGCCg -5'
28024 5' -56.3 NC_005887.1 + 30738 0.68 0.420133
Target:  5'- -gCGCaCGCucugCACCUGCgUGUCGaGCg -3'
miRNA:   3'- uaGCG-GCGcaa-GUGGACGaACAGC-CG- -5'
28024 5' -56.3 NC_005887.1 + 25499 0.69 0.410572
Target:  5'- -gCGCCGCGguaCACCUcGCggaugaUGUCGcGCu -3'
miRNA:   3'- uaGCGGCGCaa-GUGGA-CGa-----ACAGC-CG- -5'
28024 5' -56.3 NC_005887.1 + 4227 0.69 0.401148
Target:  5'- cAUCGCCGCGguugUUuuCCUGCUcgcgaUGgagcaCGGCa -3'
miRNA:   3'- -UAGCGGCGCa---AGu-GGACGA-----ACa----GCCG- -5'
28024 5' -56.3 NC_005887.1 + 32656 0.69 0.401148
Target:  5'- gAUCGCUGag-UCAucggUCUGCUgGUCGGCg -3'
miRNA:   3'- -UAGCGGCgcaAGU----GGACGAaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 40865 0.69 0.382718
Target:  5'- -gCGCCGCGcgagCGCCgcacGCc-GUCGGCg -3'
miRNA:   3'- uaGCGGCGCaa--GUGGa---CGaaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 27201 0.69 0.373717
Target:  5'- -aUGCCGuCGagCGCCUGCaugggGUCGGUc -3'
miRNA:   3'- uaGCGGC-GCaaGUGGACGaa---CAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 14542 0.67 0.499
Target:  5'- --aGCCGCuaucuauucccUCGCCUGC--GUCGGCg -3'
miRNA:   3'- uagCGGCGca---------AGUGGACGaaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 25115 0.67 0.522439
Target:  5'- -aCGCCGcCGUacgcgaUCGugucccacacgcCCUGCUUGcgCGGCg -3'
miRNA:   3'- uaGCGGC-GCA------AGU------------GGACGAACa-GCCG- -5'
28024 5' -56.3 NC_005887.1 + 4656 0.66 0.577126
Target:  5'- gAUCGCCcccgGCG-UCGCUUGCaUGcggggCGGCu -3'
miRNA:   3'- -UAGCGG----CGCaAGUGGACGaACa----GCCG- -5'
28024 5' -56.3 NC_005887.1 + 38011 0.66 0.566062
Target:  5'- -gCGCCgGCGUcgaUCAguuCCUGCggcaUGUcCGGCa -3'
miRNA:   3'- uaGCGG-CGCA---AGU---GGACGa---ACA-GCCG- -5'
28024 5' -56.3 NC_005887.1 + 37743 0.66 0.566062
Target:  5'- -gCGCCGCGgcgagCAUCUGUUgcaucUGcgCGGCc -3'
miRNA:   3'- uaGCGGCGCaa---GUGGACGA-----ACa-GCCG- -5'
28024 5' -56.3 NC_005887.1 + 33765 0.66 0.555053
Target:  5'- cUCGCCaGCGUcgaacgaaACCUGCUg--CGGUg -3'
miRNA:   3'- uAGCGG-CGCAag------UGGACGAacaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 39419 0.66 0.544108
Target:  5'- -gUGCCGCGgcgcuugCGCa-GCUUGgCGGCg -3'
miRNA:   3'- uaGCGGCGCaa-----GUGgaCGAACaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 29281 0.66 0.544108
Target:  5'- -gCGCCGCGUUCcacggAUCgGCcUUGUacgCGGCg -3'
miRNA:   3'- uaGCGGCGCAAG-----UGGaCG-AACA---GCCG- -5'
28024 5' -56.3 NC_005887.1 + 22991 0.66 0.544108
Target:  5'- cGUCGCCGCacgcgUCugCUGCgcgagcaugGUCaGCu -3'
miRNA:   3'- -UAGCGGCGca---AGugGACGaa-------CAGcCG- -5'
28024 5' -56.3 NC_005887.1 + 8397 0.66 0.543018
Target:  5'- -aCGCCGCacgcgacGUgcUCGCCgaGCgccGUCGGCa -3'
miRNA:   3'- uaGCGGCG-------CA--AGUGGa-CGaa-CAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 29373 0.66 0.533235
Target:  5'- -gUGCCGCGggUCGCC-GCU--UCGGUc -3'
miRNA:   3'- uaGCGGCGCa-AGUGGaCGAacAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.