Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28026 | 5' | -60.2 | NC_005887.1 | + | 11616 | 0.68 | 0.287802 |
Target: 5'- aCGGCGAagUCGCgaagGCCaCGCaGCGCGAc- -3' miRNA: 3'- -GCUGCUa-GGCGa---CGG-GCG-CGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 34250 | 0.68 | 0.287802 |
Target: 5'- uCGGCGAgcgCggcgaGCUGCgCGCGCGCuuUCg -3' miRNA: 3'- -GCUGCUa--Gg----CGACGgGCGCGCGcuAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 10844 | 0.69 | 0.273882 |
Target: 5'- -uGCGuucAUCCGC-GCCgCGCGCGCGGcaaUCg -3' miRNA: 3'- gcUGC---UAGGCGaCGG-GCGCGCGCU---AG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 24210 | 0.69 | 0.273882 |
Target: 5'- aCGACG-UCgGCgGCCCGCGCuucgcCGGUUg -3' miRNA: 3'- -GCUGCuAGgCGaCGGGCGCGc----GCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 14684 | 0.69 | 0.273882 |
Target: 5'- aGACGAUCaa--GCCgCGCGCGCGGc- -3' miRNA: 3'- gCUGCUAGgcgaCGG-GCGCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 34985 | 0.69 | 0.267127 |
Target: 5'- gCGGCGuugUCGUcgGUCUGCaGCGCGAUCg -3' miRNA: 3'- -GCUGCua-GGCGa-CGGGCG-CGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 34116 | 0.67 | 0.354787 |
Target: 5'- gGAUGuugCCGUUcucgaugcugaacaGCCCGCGCGUG-UCg -3' miRNA: 3'- gCUGCua-GGCGA--------------CGGGCGCGCGCuAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 33508 | 0.67 | 0.355618 |
Target: 5'- cCGGCGuUCacaaGCUGCCCGCGauucacgaaaaaGCGGa- -3' miRNA: 3'- -GCUGCuAGg---CGACGGGCGCg-----------CGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 11726 | 0.66 | 0.407013 |
Target: 5'- -aACGAUCCGgauCUGCCggaCGCGCugcgcgaguugcucGCGAUCc -3' miRNA: 3'- gcUGCUAGGC---GACGG---GCGCG--------------CGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 41794 | 0.66 | 0.400675 |
Target: 5'- cCGGCGGUCuucgCGCUGUauccggcgCgGCGCGCGGc- -3' miRNA: 3'- -GCUGCUAG----GCGACG--------GgCGCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 18948 | 0.66 | 0.391732 |
Target: 5'- uCGACGcgCUGCUGCggCUGCcagcggcaGCGCGAg- -3' miRNA: 3'- -GCUGCuaGGCGACG--GGCG--------CGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 28959 | 0.66 | 0.382919 |
Target: 5'- cCGACG-UCCGCcgcGCCgGCcuucaGCGCGAg- -3' miRNA: 3'- -GCUGCuAGGCGa--CGGgCG-----CGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 27831 | 0.66 | 0.374239 |
Target: 5'- cCGACGG-CCGC-GCCUGCaaGCGGa- -3' miRNA: 3'- -GCUGCUaGGCGaCGGGCGcgCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 13772 | 0.66 | 0.374239 |
Target: 5'- uCGuCGA-CCGC-GUCCGCGCaGCGggCg -3' miRNA: 3'- -GCuGCUaGGCGaCGGGCGCG-CGCuaG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 33640 | 0.66 | 0.374239 |
Target: 5'- gCGACGAagCGCUuaCCGCcGCgGCgGAUCg -3' miRNA: 3'- -GCUGCUagGCGAcgGGCG-CG-CG-CUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 1421 | 0.66 | 0.374239 |
Target: 5'- uCGGCGuugCCGaacucgGUgCGCGCGCGGUa -3' miRNA: 3'- -GCUGCua-GGCga----CGgGCGCGCGCUAg -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29310 | 0.67 | 0.365693 |
Target: 5'- gCGGCGA--CGCUGgCCGUGUG-GAUCu -3' miRNA: 3'- -GCUGCUagGCGACgGGCGCGCgCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 25764 | 0.67 | 0.365693 |
Target: 5'- uGGCGAUuuGCaguUGCuuGCGgGCccGGUCg -3' miRNA: 3'- gCUGCUAggCG---ACGggCGCgCG--CUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 41698 | 0.67 | 0.357283 |
Target: 5'- uCGGCGGUCaugCGCgUGCgcucgCCGCGCGCuuUCa -3' miRNA: 3'- -GCUGCUAG---GCG-ACG-----GGCGCGCGcuAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 17796 | 0.67 | 0.357283 |
Target: 5'- aCGGCGAUCaugggCGCccggccgaaggUGCggCCGCGCGUGAUg -3' miRNA: 3'- -GCUGCUAG-----GCG-----------ACG--GGCGCGCGCUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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