miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 40724 0.73 0.146311
Target:  5'- aGACGAcuucgaggUCGCcGCCCGCGUcgagGCGAUCg -3'
miRNA:   3'- gCUGCUa-------GGCGaCGGGCGCG----CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 23280 0.72 0.150326
Target:  5'- uGGCGGUugCCGCaGCCCGCGC-CGAa- -3'
miRNA:   3'- gCUGCUA--GGCGaCGGGCGCGcGCUag -5'
28026 5' -60.2 NC_005887.1 + 29191 0.7 0.217861
Target:  5'- gCGAgGAUCUGCgcgGCCUuaaGCuGCGCGAUg -3'
miRNA:   3'- -GCUgCUAGGCGa--CGGG---CG-CGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 40903 0.7 0.223567
Target:  5'- aCGACGAgCCGCcgaagGCuaCCGCGCGCGc-- -3'
miRNA:   3'- -GCUGCUaGGCGa----CG--GGCGCGCGCuag -5'
28026 5' -60.2 NC_005887.1 + 27140 0.7 0.229399
Target:  5'- uCGGCGAUCaCGCggccgaacgGCCaCGgGCGCGGg- -3'
miRNA:   3'- -GCUGCUAG-GCGa--------CGG-GCgCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 22518 0.7 0.234757
Target:  5'- uCGGCGGUgaaucuguucaagCCGCUGCgcaugCCGUcCGCGAUCg -3'
miRNA:   3'- -GCUGCUA-------------GGCGACG-----GGCGcGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 4626 0.7 0.235359
Target:  5'- gCGGCG--CCGgUGgCCGCcgGCGCGAUCa -3'
miRNA:   3'- -GCUGCuaGGCgACgGGCG--CGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 42077 0.69 0.267127
Target:  5'- uCGACGAg-CGCUGUCgCGUgggGCGCGAUg -3'
miRNA:   3'- -GCUGCUagGCGACGG-GCG---CGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 24608 0.69 0.260507
Target:  5'- gCGAUGAUCuUGCgGCCgCaCGCGUGGUCg -3'
miRNA:   3'- -GCUGCUAG-GCGaCGG-GcGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 1135 0.69 0.260507
Target:  5'- uGACGAagCCGC-GCgUGCGCGUGAa- -3'
miRNA:   3'- gCUGCUa-GGCGaCGgGCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 30474 0.69 0.247669
Target:  5'- aGGCGGUgCGCgacgcgGCCCGUGCGuUGcgCa -3'
miRNA:   3'- gCUGCUAgGCGa-----CGGGCGCGC-GCuaG- -5'
28026 5' -60.2 NC_005887.1 + 27655 0.69 0.247669
Target:  5'- -uGCGcgCUgaGCUGCCgCGCGCGCGGc- -3'
miRNA:   3'- gcUGCuaGG--CGACGG-GCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 24881 0.7 0.235359
Target:  5'- gCGGCGG-CCGaUGCCgCGCGCuCGGUCu -3'
miRNA:   3'- -GCUGCUaGGCgACGG-GCGCGcGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 13772 0.66 0.374239
Target:  5'- uCGuCGA-CCGC-GUCCGCGCaGCGggCg -3'
miRNA:   3'- -GCuGCUaGGCGaCGGGCGCG-CGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 27831 0.66 0.374239
Target:  5'- cCGACGG-CCGC-GCCUGCaaGCGGa- -3'
miRNA:   3'- -GCUGCUaGGCGaCGGGCGcgCGCUag -5'
28026 5' -60.2 NC_005887.1 + 28959 0.66 0.382919
Target:  5'- cCGACG-UCCGCcgcGCCgGCcuucaGCGCGAg- -3'
miRNA:   3'- -GCUGCuAGGCGa--CGGgCG-----CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 18948 0.66 0.391732
Target:  5'- uCGACGcgCUGCUGCggCUGCcagcggcaGCGCGAg- -3'
miRNA:   3'- -GCUGCuaGGCGACG--GGCG--------CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 41794 0.66 0.400675
Target:  5'- cCGGCGGUCuucgCGCUGUauccggcgCgGCGCGCGGc- -3'
miRNA:   3'- -GCUGCUAG----GCGACG--------GgCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 11726 0.66 0.407013
Target:  5'- -aACGAUCCGgauCUGCCggaCGCGCugcgcgaguugcucGCGAUCc -3'
miRNA:   3'- gcUGCUAGGC---GACGG---GCGCG--------------CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 26949 1.09 0.00024
Target:  5'- uCGACGAUCCGCUGCCCGCGCGCGAUCa -3'
miRNA:   3'- -GCUGCUAGGCGACGGGCGCGCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.