miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 15632 0.67 0.340068
Target:  5'- --cCGGUCUaugucgaGCUGCCCGCggccGCGCGAc- -3'
miRNA:   3'- gcuGCUAGG-------CGACGGGCG----CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 16156 0.66 0.391732
Target:  5'- cCGGCGcgCCGa-GUgCGCGaGCGAUCg -3'
miRNA:   3'- -GCUGCuaGGCgaCGgGCGCgCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 16835 0.67 0.332876
Target:  5'- gCGACGAUuaugCCGCcaCCCGCcGCGCcAUCg -3'
miRNA:   3'- -GCUGCUA----GGCGacGGGCG-CGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 17407 0.76 0.084177
Target:  5'- aGGCGGcCCGCgcGCaCCGCGuCGCGAUCg -3'
miRNA:   3'- gCUGCUaGGCGa-CG-GGCGC-GCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 17796 0.67 0.357283
Target:  5'- aCGGCGAUCaugggCGCccggccgaaggUGCggCCGCGCGUGAUg -3'
miRNA:   3'- -GCUGCUAG-----GCG-----------ACG--GGCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 18610 0.75 0.094158
Target:  5'- -uACGGUUCGUUGCUCGgcaGCGCGAUCg -3'
miRNA:   3'- gcUGCUAGGCGACGGGCg--CGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 18948 0.66 0.391732
Target:  5'- uCGACGcgCUGCUGCggCUGCcagcggcaGCGCGAg- -3'
miRNA:   3'- -GCUGCuaGGCGACG--GGCG--------CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 19115 0.69 0.247669
Target:  5'- cCGACcg-CCGCcGCUCGCGUGCcGUCg -3'
miRNA:   3'- -GCUGcuaGGCGaCGGGCGCGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 20076 0.67 0.325017
Target:  5'- cCGACGAgaaaUCCGaucGCCUGCuGCGCGccaccGUCg -3'
miRNA:   3'- -GCUGCU----AGGCga-CGGGCG-CGCGC-----UAG- -5'
28026 5' -60.2 NC_005887.1 + 22106 0.66 0.400675
Target:  5'- uGugGAaaCUGCUGCCgG-GUGCGAUUg -3'
miRNA:   3'- gCugCUa-GGCGACGGgCgCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 22518 0.7 0.234757
Target:  5'- uCGGCGGUgaaucuguucaagCCGCUGCgcaugCCGUcCGCGAUCg -3'
miRNA:   3'- -GCUGCUA-------------GGCGACG-----GGCGcGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 23280 0.72 0.150326
Target:  5'- uGGCGGUugCCGCaGCCCGCGC-CGAa- -3'
miRNA:   3'- gCUGCUA--GGCGaCGGGCGCGcGCUag -5'
28026 5' -60.2 NC_005887.1 + 24210 0.69 0.273882
Target:  5'- aCGACG-UCgGCgGCCCGCGCuucgcCGGUUg -3'
miRNA:   3'- -GCUGCuAGgCGaCGGGCGCGc----GCUAG- -5'
28026 5' -60.2 NC_005887.1 + 24608 0.69 0.260507
Target:  5'- gCGAUGAUCuUGCgGCCgCaCGCGUGGUCg -3'
miRNA:   3'- -GCUGCUAG-GCGaCGG-GcGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 24881 0.7 0.235359
Target:  5'- gCGGCGG-CCGaUGCCgCGCGCuCGGUCu -3'
miRNA:   3'- -GCUGCUaGGCgACGG-GCGCGcGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 25329 0.68 0.308964
Target:  5'- --cCGAUCCGUUGCCaagcaccuugcucUGCGCGUggcgGAUCg -3'
miRNA:   3'- gcuGCUAGGCGACGG-------------GCGCGCG----CUAG- -5'
28026 5' -60.2 NC_005887.1 + 25764 0.67 0.365693
Target:  5'- uGGCGAUuuGCaguUGCuuGCGgGCccGGUCg -3'
miRNA:   3'- gCUGCUAggCG---ACGggCGCgCG--CUAG- -5'
28026 5' -60.2 NC_005887.1 + 25891 0.71 0.191175
Target:  5'- cCGcGCGGUCgagCGCaUGCCCGCGCGCa--- -3'
miRNA:   3'- -GC-UGCUAG---GCG-ACGGGCGCGCGcuag -5'
28026 5' -60.2 NC_005887.1 + 26101 0.68 0.317296
Target:  5'- uCGGCGA--CGgUGCCCGUGCGCu--- -3'
miRNA:   3'- -GCUGCUagGCgACGGGCGCGCGcuag -5'
28026 5' -60.2 NC_005887.1 + 26728 0.68 0.302272
Target:  5'- uCGGCGAgccCgGCcGCCUGCuGCGCGAc- -3'
miRNA:   3'- -GCUGCUa--GgCGaCGGGCG-CGCGCUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.