miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 32731 0.66 0.400675
Target:  5'- aCGGCGGgguagCGCggcGCUCGCGUGCGcgCc -3'
miRNA:   3'- -GCUGCUag---GCGa--CGGGCGCGCGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 32310 0.71 0.19991
Target:  5'- gCGACauGAUgCCGCUGUucgugccagcgcggCCGCGCGUGAUg -3'
miRNA:   3'- -GCUG--CUA-GGCGACG--------------GGCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 30768 0.68 0.302272
Target:  5'- uCGACcGUgCGCgcgGCgaguuccuuCUGCGCGCGAUCa -3'
miRNA:   3'- -GCUGcUAgGCGa--CG---------GGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 30474 0.69 0.247669
Target:  5'- aGGCGGUgCGCgacgcgGCCCGUGCGuUGcgCa -3'
miRNA:   3'- gCUGCUAgGCGa-----CGGGCGCGC-GCuaG- -5'
28026 5' -60.2 NC_005887.1 + 29595 0.7 0.217861
Target:  5'- aCGGCGGuguucUCgCGUUGCagCGCgGCGCGAUCg -3'
miRNA:   3'- -GCUGCU-----AG-GCGACGg-GCG-CGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 29515 0.66 0.400675
Target:  5'- aCGGCGggCgCGUUGUagaacagcacgUCGCGCGCGAc- -3'
miRNA:   3'- -GCUGCuaG-GCGACG-----------GGCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 29310 0.67 0.365693
Target:  5'- gCGGCGA--CGCUGgCCGUGUG-GAUCu -3'
miRNA:   3'- -GCUGCUagGCGACgGGCGCGCgCUAG- -5'
28026 5' -60.2 NC_005887.1 + 29191 0.7 0.217861
Target:  5'- gCGAgGAUCUGCgcgGCCUuaaGCuGCGCGAUg -3'
miRNA:   3'- -GCUgCUAGGCGa--CGGG---CG-CGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 29178 0.75 0.091562
Target:  5'- uCGACcgcucCCGCUGUCUGCGCGCGcgCg -3'
miRNA:   3'- -GCUGcua--GGCGACGGGCGCGCGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 28959 0.66 0.382919
Target:  5'- cCGACG-UCCGCcgcGCCgGCcuucaGCGCGAg- -3'
miRNA:   3'- -GCUGCuAGGCGa--CGGgCG-----CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 28648 0.73 0.134849
Target:  5'- cCGuuGAUCUGCUGgCCGCcCGUGGUCg -3'
miRNA:   3'- -GCugCUAGGCGACgGGCGcGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 28568 0.68 0.309715
Target:  5'- aGGCG--UCGCcGCCCGCuGCGCGGa- -3'
miRNA:   3'- gCUGCuaGGCGaCGGGCG-CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 27831 0.66 0.374239
Target:  5'- cCGACGG-CCGC-GCCUGCaaGCGGa- -3'
miRNA:   3'- -GCUGCUaGGCGaCGGGCGcgCGCUag -5'
28026 5' -60.2 NC_005887.1 + 27655 0.69 0.247669
Target:  5'- -uGCGcgCUgaGCUGCCgCGCGCGCGGc- -3'
miRNA:   3'- gcUGCuaGG--CGACGG-GCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 27241 0.66 0.373378
Target:  5'- gCGGCGcaacugcAUCgCGCgccgGCCCGCGuCGCcaauGAUCg -3'
miRNA:   3'- -GCUGC-------UAG-GCGa---CGGGCGC-GCG----CUAG- -5'
28026 5' -60.2 NC_005887.1 + 27140 0.7 0.229399
Target:  5'- uCGGCGAUCaCGCggccgaacgGCCaCGgGCGCGGg- -3'
miRNA:   3'- -GCUGCUAG-GCGa--------CGG-GCgCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 26949 1.09 0.00024
Target:  5'- uCGACGAUCCGCUGCCCGCGCGCGAUCa -3'
miRNA:   3'- -GCUGCUAGGCGACGGGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 26728 0.68 0.302272
Target:  5'- uCGGCGAgccCgGCcGCCUGCuGCGCGAc- -3'
miRNA:   3'- -GCUGCUa--GgCGaCGGGCG-CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 26101 0.68 0.317296
Target:  5'- uCGGCGA--CGgUGCCCGUGCGCu--- -3'
miRNA:   3'- -GCUGCUagGCgACGGGCGCGCGcuag -5'
28026 5' -60.2 NC_005887.1 + 25891 0.71 0.191175
Target:  5'- cCGcGCGGUCgagCGCaUGCCCGCGCGCa--- -3'
miRNA:   3'- -GC-UGCUAG---GCG-ACGGGCGCGCGcuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.