Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28026 | 5' | -60.2 | NC_005887.1 | + | 32731 | 0.66 | 0.400675 |
Target: 5'- aCGGCGGgguagCGCggcGCUCGCGUGCGcgCc -3' miRNA: 3'- -GCUGCUag---GCGa--CGGGCGCGCGCuaG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 32310 | 0.71 | 0.19991 |
Target: 5'- gCGACauGAUgCCGCUGUucgugccagcgcggCCGCGCGUGAUg -3' miRNA: 3'- -GCUG--CUA-GGCGACG--------------GGCGCGCGCUAg -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 30768 | 0.68 | 0.302272 |
Target: 5'- uCGACcGUgCGCgcgGCgaguuccuuCUGCGCGCGAUCa -3' miRNA: 3'- -GCUGcUAgGCGa--CG---------GGCGCGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 30474 | 0.69 | 0.247669 |
Target: 5'- aGGCGGUgCGCgacgcgGCCCGUGCGuUGcgCa -3' miRNA: 3'- gCUGCUAgGCGa-----CGGGCGCGC-GCuaG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29595 | 0.7 | 0.217861 |
Target: 5'- aCGGCGGuguucUCgCGUUGCagCGCgGCGCGAUCg -3' miRNA: 3'- -GCUGCU-----AG-GCGACGg-GCG-CGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29515 | 0.66 | 0.400675 |
Target: 5'- aCGGCGggCgCGUUGUagaacagcacgUCGCGCGCGAc- -3' miRNA: 3'- -GCUGCuaG-GCGACG-----------GGCGCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29310 | 0.67 | 0.365693 |
Target: 5'- gCGGCGA--CGCUGgCCGUGUG-GAUCu -3' miRNA: 3'- -GCUGCUagGCGACgGGCGCGCgCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29191 | 0.7 | 0.217861 |
Target: 5'- gCGAgGAUCUGCgcgGCCUuaaGCuGCGCGAUg -3' miRNA: 3'- -GCUgCUAGGCGa--CGGG---CG-CGCGCUAg -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 29178 | 0.75 | 0.091562 |
Target: 5'- uCGACcgcucCCGCUGUCUGCGCGCGcgCg -3' miRNA: 3'- -GCUGcua--GGCGACGGGCGCGCGCuaG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 28959 | 0.66 | 0.382919 |
Target: 5'- cCGACG-UCCGCcgcGCCgGCcuucaGCGCGAg- -3' miRNA: 3'- -GCUGCuAGGCGa--CGGgCG-----CGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 28648 | 0.73 | 0.134849 |
Target: 5'- cCGuuGAUCUGCUGgCCGCcCGUGGUCg -3' miRNA: 3'- -GCugCUAGGCGACgGGCGcGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 28568 | 0.68 | 0.309715 |
Target: 5'- aGGCG--UCGCcGCCCGCuGCGCGGa- -3' miRNA: 3'- gCUGCuaGGCGaCGGGCG-CGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 27831 | 0.66 | 0.374239 |
Target: 5'- cCGACGG-CCGC-GCCUGCaaGCGGa- -3' miRNA: 3'- -GCUGCUaGGCGaCGGGCGcgCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 27655 | 0.69 | 0.247669 |
Target: 5'- -uGCGcgCUgaGCUGCCgCGCGCGCGGc- -3' miRNA: 3'- gcUGCuaGG--CGACGG-GCGCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 27241 | 0.66 | 0.373378 |
Target: 5'- gCGGCGcaacugcAUCgCGCgccgGCCCGCGuCGCcaauGAUCg -3' miRNA: 3'- -GCUGC-------UAG-GCGa---CGGGCGC-GCG----CUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 27140 | 0.7 | 0.229399 |
Target: 5'- uCGGCGAUCaCGCggccgaacgGCCaCGgGCGCGGg- -3' miRNA: 3'- -GCUGCUAG-GCGa--------CGG-GCgCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 26949 | 1.09 | 0.00024 |
Target: 5'- uCGACGAUCCGCUGCCCGCGCGCGAUCa -3' miRNA: 3'- -GCUGCUAGGCGACGGGCGCGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 26728 | 0.68 | 0.302272 |
Target: 5'- uCGGCGAgccCgGCcGCCUGCuGCGCGAc- -3' miRNA: 3'- -GCUGCUa--GgCGaCGGGCG-CGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 26101 | 0.68 | 0.317296 |
Target: 5'- uCGGCGA--CGgUGCCCGUGCGCu--- -3' miRNA: 3'- -GCUGCUagGCgACGGGCGCGCGcuag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 25891 | 0.71 | 0.191175 |
Target: 5'- cCGcGCGGUCgagCGCaUGCCCGCGCGCa--- -3' miRNA: 3'- -GC-UGCUAG---GCG-ACGGGCGCGCGcuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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