miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 42077 0.69 0.267127
Target:  5'- uCGACGAg-CGCUGUCgCGUgggGCGCGAUg -3'
miRNA:   3'- -GCUGCUagGCGACGG-GCG---CGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 41794 0.66 0.400675
Target:  5'- cCGGCGGUCuucgCGCUGUauccggcgCgGCGCGCGGc- -3'
miRNA:   3'- -GCUGCUAG----GCGACG--------GgCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 41730 0.74 0.111251
Target:  5'- gCGGCGAUCCGau-CCCgGCGCGCGggCu -3'
miRNA:   3'- -GCUGCUAGGCgacGGG-CGCGCGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 41698 0.67 0.357283
Target:  5'- uCGGCGGUCaugCGCgUGCgcucgCCGCGCGCuuUCa -3'
miRNA:   3'- -GCUGCUAG---GCG-ACG-----GGCGCGCGcuAG- -5'
28026 5' -60.2 NC_005887.1 + 41632 0.67 0.34901
Target:  5'- uGAgGAUCUGCUGCguCUGCGCG-GcgCa -3'
miRNA:   3'- gCUgCUAGGCGACG--GGCGCGCgCuaG- -5'
28026 5' -60.2 NC_005887.1 + 41185 0.67 0.357283
Target:  5'- -cAUGAUCCGcCUGgcugcauccgaCCCGCGCGUcGUCg -3'
miRNA:   3'- gcUGCUAGGC-GAC-----------GGGCGCGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 40903 0.7 0.223567
Target:  5'- aCGACGAgCCGCcgaagGCuaCCGCGCGCGc-- -3'
miRNA:   3'- -GCUGCUaGGCGa----CG--GGCGCGCGCuag -5'
28026 5' -60.2 NC_005887.1 + 40724 0.73 0.146311
Target:  5'- aGACGAcuucgaggUCGCcGCCCGCGUcgagGCGAUCg -3'
miRNA:   3'- gCUGCUa-------GGCGaCGGGCGCG----CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 40546 0.68 0.317296
Target:  5'- aCGACGGUCUgGC-GCUCGCGCaCGAg- -3'
miRNA:   3'- -GCUGCUAGG-CGaCGGGCGCGcGCUag -5'
28026 5' -60.2 NC_005887.1 + 40112 0.68 0.317296
Target:  5'- gGACGAgCCGCaggacGCCUacaGCGUGCGGUg -3'
miRNA:   3'- gCUGCUaGGCGa----CGGG---CGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 39879 0.69 0.256599
Target:  5'- uCGAUGAUCCGCgucagcGCCuCgucgacggcgccguaGCGCGCGAg- -3'
miRNA:   3'- -GCUGCUAGGCGa-----CGG-G---------------CGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 39465 0.71 0.196272
Target:  5'- cCGACGuGUCCGUcgucGCCUGCGCGUuAUCc -3'
miRNA:   3'- -GCUGC-UAGGCGa---CGGGCGCGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 39155 0.69 0.241449
Target:  5'- gCGGCccuUCuCGCUGUCCGgGCGCGGc- -3'
miRNA:   3'- -GCUGcu-AG-GCGACGGGCgCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 38059 0.71 0.201487
Target:  5'- uCGGCGAggaugUCGac-CUCGCGCGCGAUCa -3'
miRNA:   3'- -GCUGCUa----GGCgacGGGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 35653 0.66 0.400675
Target:  5'- -uGCGAgcucgaCGCUGUCgacauacagcaGCGCGCGAUCg -3'
miRNA:   3'- gcUGCUag----GCGACGGg----------CGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 34985 0.69 0.267127
Target:  5'- gCGGCGuugUCGUcgGUCUGCaGCGCGAUCg -3'
miRNA:   3'- -GCUGCua-GGCGa-CGGGCG-CGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 34250 0.68 0.287802
Target:  5'- uCGGCGAgcgCggcgaGCUGCgCGCGCGCuuUCg -3'
miRNA:   3'- -GCUGCUa--Gg----CGACGgGCGCGCGcuAG- -5'
28026 5' -60.2 NC_005887.1 + 34116 0.67 0.354787
Target:  5'- gGAUGuugCCGUUcucgaugcugaacaGCCCGCGCGUG-UCg -3'
miRNA:   3'- gCUGCua-GGCGA--------------CGGGCGCGCGCuAG- -5'
28026 5' -60.2 NC_005887.1 + 33640 0.66 0.374239
Target:  5'- gCGACGAagCGCUuaCCGCcGCgGCgGAUCg -3'
miRNA:   3'- -GCUGCUagGCGAcgGGCG-CG-CG-CUAG- -5'
28026 5' -60.2 NC_005887.1 + 33508 0.67 0.355618
Target:  5'- cCGGCGuUCacaaGCUGCCCGCGauucacgaaaaaGCGGa- -3'
miRNA:   3'- -GCUGCuAGg---CGACGGGCGCg-----------CGCUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.