miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 26949 1.09 0.00024
Target:  5'- uCGACGAUCCGCUGCCCGCGCGCGAUCa -3'
miRNA:   3'- -GCUGCUAGGCGACGGGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 17407 0.76 0.084177
Target:  5'- aGGCGGcCCGCgcGCaCCGCGuCGCGAUCg -3'
miRNA:   3'- gCUGCUaGGCGa-CG-GGCGC-GCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 29178 0.75 0.091562
Target:  5'- uCGACcgcucCCGCUGUCUGCGCGCGcgCg -3'
miRNA:   3'- -GCUGcua--GGCGACGGGCGCGCGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 18610 0.75 0.094158
Target:  5'- -uACGGUUCGUUGCUCGgcaGCGCGAUCg -3'
miRNA:   3'- gcUGCUAGGCGACGGGCg--CGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 5340 0.74 0.108213
Target:  5'- cCGACGuGUUCGCguacgGCCUGCGCGUGcUCg -3'
miRNA:   3'- -GCUGC-UAGGCGa----CGGGCGCGCGCuAG- -5'
28026 5' -60.2 NC_005887.1 + 41730 0.74 0.111251
Target:  5'- gCGGCGAUCCGau-CCCgGCGCGCGggCu -3'
miRNA:   3'- -GCUGCUAGGCgacGGG-CGCGCGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 28648 0.73 0.134849
Target:  5'- cCGuuGAUCUGCUGgCCGCcCGUGGUCg -3'
miRNA:   3'- -GCugCUAGGCGACgGGCGcGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 40724 0.73 0.146311
Target:  5'- aGACGAcuucgaggUCGCcGCCCGCGUcgagGCGAUCg -3'
miRNA:   3'- gCUGCUa-------GGCGaCGGGCGCG----CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 23280 0.72 0.150326
Target:  5'- uGGCGGUugCCGCaGCCCGCGC-CGAa- -3'
miRNA:   3'- gCUGCUA--GGCGaCGGGCGCGcGCUag -5'
28026 5' -60.2 NC_005887.1 + 15097 0.72 0.167401
Target:  5'- uGGCGA--CGCggGCCgGCGCGCGAUg -3'
miRNA:   3'- gCUGCUagGCGa-CGGgCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 25891 0.71 0.191175
Target:  5'- cCGcGCGGUCgagCGCaUGCCCGCGCGCa--- -3'
miRNA:   3'- -GC-UGCUAG---GCG-ACGGGCGCGCGcuag -5'
28026 5' -60.2 NC_005887.1 + 39465 0.71 0.196272
Target:  5'- cCGACGuGUCCGUcgucGCCUGCGCGUuAUCc -3'
miRNA:   3'- -GCUGC-UAGGCGa---CGGGCGCGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 32310 0.71 0.19991
Target:  5'- gCGACauGAUgCCGCUGUucgugccagcgcggCCGCGCGUGAUg -3'
miRNA:   3'- -GCUG--CUA-GGCGACG--------------GGCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 38059 0.71 0.201487
Target:  5'- uCGGCGAggaugUCGac-CUCGCGCGCGAUCa -3'
miRNA:   3'- -GCUGCUa----GGCgacGGGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 29595 0.7 0.217861
Target:  5'- aCGGCGGuguucUCgCGUUGCagCGCgGCGCGAUCg -3'
miRNA:   3'- -GCUGCU-----AG-GCGACGg-GCG-CGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 29191 0.7 0.217861
Target:  5'- gCGAgGAUCUGCgcgGCCUuaaGCuGCGCGAUg -3'
miRNA:   3'- -GCUgCUAGGCGa--CGGG---CG-CGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 40903 0.7 0.223567
Target:  5'- aCGACGAgCCGCcgaagGCuaCCGCGCGCGc-- -3'
miRNA:   3'- -GCUGCUaGGCGa----CG--GGCGCGCGCuag -5'
28026 5' -60.2 NC_005887.1 + 13909 0.7 0.229399
Target:  5'- cCGACGAagggucagcUUCGCgagcacgagcGCCUGCGCGCGcUCg -3'
miRNA:   3'- -GCUGCU---------AGGCGa---------CGGGCGCGCGCuAG- -5'
28026 5' -60.2 NC_005887.1 + 27140 0.7 0.229399
Target:  5'- uCGGCGAUCaCGCggccgaacgGCCaCGgGCGCGGg- -3'
miRNA:   3'- -GCUGCUAG-GCGa--------CGG-GCgCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 22518 0.7 0.234757
Target:  5'- uCGGCGGUgaaucuguucaagCCGCUGCgcaugCCGUcCGCGAUCg -3'
miRNA:   3'- -GCUGCUA-------------GGCGACG-----GGCGcGCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.