miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 601 0.66 0.409748
Target:  5'- uCGugGucUUCGaccagaGCCCGCGCGCcggGAUCg -3'
miRNA:   3'- -GCugCu-AGGCga----CGGGCGCGCG---CUAG- -5'
28026 5' -60.2 NC_005887.1 + 11726 0.66 0.407013
Target:  5'- -aACGAUCCGgauCUGCCggaCGCGCugcgcgaguugcucGCGAUCc -3'
miRNA:   3'- gcUGCUAGGC---GACGG---GCGCG--------------CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 35653 0.66 0.400675
Target:  5'- -uGCGAgcucgaCGCUGUCgacauacagcaGCGCGCGAUCg -3'
miRNA:   3'- gcUGCUag----GCGACGGg----------CGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 41794 0.66 0.400675
Target:  5'- cCGGCGGUCuucgCGCUGUauccggcgCgGCGCGCGGc- -3'
miRNA:   3'- -GCUGCUAG----GCGACG--------GgCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 29515 0.66 0.400675
Target:  5'- aCGGCGggCgCGUUGUagaacagcacgUCGCGCGCGAc- -3'
miRNA:   3'- -GCUGCuaG-GCGACG-----------GGCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 22106 0.66 0.400675
Target:  5'- uGugGAaaCUGCUGCCgG-GUGCGAUUg -3'
miRNA:   3'- gCugCUa-GGCGACGGgCgCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 32731 0.66 0.400675
Target:  5'- aCGGCGGgguagCGCggcGCUCGCGUGCGcgCc -3'
miRNA:   3'- -GCUGCUag---GCGa--CGGGCGCGCGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 18948 0.66 0.391732
Target:  5'- uCGACGcgCUGCUGCggCUGCcagcggcaGCGCGAg- -3'
miRNA:   3'- -GCUGCuaGGCGACG--GGCG--------CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 16156 0.66 0.391732
Target:  5'- cCGGCGcgCCGa-GUgCGCGaGCGAUCg -3'
miRNA:   3'- -GCUGCuaGGCgaCGgGCGCgCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 12423 0.66 0.382919
Target:  5'- aCGACa--CCGCgg--CGCGCGCGAUCg -3'
miRNA:   3'- -GCUGcuaGGCGacggGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 28959 0.66 0.382919
Target:  5'- cCGACG-UCCGCcgcGCCgGCcuucaGCGCGAg- -3'
miRNA:   3'- -GCUGCuAGGCGa--CGGgCG-----CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 27831 0.66 0.374239
Target:  5'- cCGACGG-CCGC-GCCUGCaaGCGGa- -3'
miRNA:   3'- -GCUGCUaGGCGaCGGGCGcgCGCUag -5'
28026 5' -60.2 NC_005887.1 + 13772 0.66 0.374239
Target:  5'- uCGuCGA-CCGC-GUCCGCGCaGCGggCg -3'
miRNA:   3'- -GCuGCUaGGCGaCGGGCGCG-CGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 1421 0.66 0.374239
Target:  5'- uCGGCGuugCCGaacucgGUgCGCGCGCGGUa -3'
miRNA:   3'- -GCUGCua-GGCga----CGgGCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 33640 0.66 0.374239
Target:  5'- gCGACGAagCGCUuaCCGCcGCgGCgGAUCg -3'
miRNA:   3'- -GCUGCUagGCGAcgGGCG-CG-CG-CUAG- -5'
28026 5' -60.2 NC_005887.1 + 27241 0.66 0.373378
Target:  5'- gCGGCGcaacugcAUCgCGCgccgGCCCGCGuCGCcaauGAUCg -3'
miRNA:   3'- -GCUGC-------UAG-GCGa---CGGGCGC-GCG----CUAG- -5'
28026 5' -60.2 NC_005887.1 + 25764 0.67 0.365693
Target:  5'- uGGCGAUuuGCaguUGCuuGCGgGCccGGUCg -3'
miRNA:   3'- gCUGCUAggCG---ACGggCGCgCG--CUAG- -5'
28026 5' -60.2 NC_005887.1 + 29310 0.67 0.365693
Target:  5'- gCGGCGA--CGCUGgCCGUGUG-GAUCu -3'
miRNA:   3'- -GCUGCUagGCGACgGGCGCGCgCUAG- -5'
28026 5' -60.2 NC_005887.1 + 41185 0.67 0.357283
Target:  5'- -cAUGAUCCGcCUGgcugcauccgaCCCGCGCGUcGUCg -3'
miRNA:   3'- gcUGCUAGGC-GAC-----------GGGCGCGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 41698 0.67 0.357283
Target:  5'- uCGGCGGUCaugCGCgUGCgcucgCCGCGCGCuuUCa -3'
miRNA:   3'- -GCUGCUAG---GCG-ACG-----GGCGCGCGcuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.