miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 40112 0.68 0.317296
Target:  5'- gGACGAgCCGCaggacGCCUacaGCGUGCGGUg -3'
miRNA:   3'- gCUGCUaGGCGa----CGGG---CGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 1135 0.69 0.260507
Target:  5'- uGACGAagCCGC-GCgUGCGCGUGAa- -3'
miRNA:   3'- gCUGCUa-GGCGaCGgGCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 24608 0.69 0.260507
Target:  5'- gCGAUGAUCuUGCgGCCgCaCGCGUGGUCg -3'
miRNA:   3'- -GCUGCUAG-GCGaCGG-GcGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 42077 0.69 0.267127
Target:  5'- uCGACGAg-CGCUGUCgCGUgggGCGCGAUg -3'
miRNA:   3'- -GCUGCUagGCGACGG-GCG---CGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 415 0.68 0.287802
Target:  5'- aGACGcgCCGCgccGCCCGCuguuGCuGCGcUCg -3'
miRNA:   3'- gCUGCuaGGCGa--CGGGCG----CG-CGCuAG- -5'
28026 5' -60.2 NC_005887.1 + 9226 0.68 0.294968
Target:  5'- aGAuCGGUCCuagcgaaCUGCgCCGCGUcgGCGAUCg -3'
miRNA:   3'- gCU-GCUAGGc------GACG-GGCGCG--CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 30768 0.68 0.302272
Target:  5'- uCGACcGUgCGCgcgGCgaguuccuuCUGCGCGCGAUCa -3'
miRNA:   3'- -GCUGcUAgGCGa--CG---------GGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 28568 0.68 0.309715
Target:  5'- aGGCG--UCGCcGCCCGCuGCGCGGa- -3'
miRNA:   3'- gCUGCuaGGCGaCGGGCG-CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 15386 0.68 0.317296
Target:  5'- uCGACGccgCGCUGaUCGCGCGCGggCa -3'
miRNA:   3'- -GCUGCuagGCGACgGGCGCGCGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 30474 0.69 0.247669
Target:  5'- aGGCGGUgCGCgacgcgGCCCGUGCGuUGcgCa -3'
miRNA:   3'- gCUGCUAgGCGa-----CGGGCGCGC-GCuaG- -5'
28026 5' -60.2 NC_005887.1 + 27655 0.69 0.247669
Target:  5'- -uGCGcgCUgaGCUGCCgCGCGCGCGGc- -3'
miRNA:   3'- gcUGCuaGG--CGACGG-GCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 24881 0.7 0.235359
Target:  5'- gCGGCGG-CCGaUGCCgCGCGCuCGGUCu -3'
miRNA:   3'- -GCUGCUaGGCgACGG-GCGCGcGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 41730 0.74 0.111251
Target:  5'- gCGGCGAUCCGau-CCCgGCGCGCGggCu -3'
miRNA:   3'- -GCUGCUAGGCgacGGG-CGCGCGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 40724 0.73 0.146311
Target:  5'- aGACGAcuucgaggUCGCcGCCCGCGUcgagGCGAUCg -3'
miRNA:   3'- gCUGCUa-------GGCGaCGGGCGCG----CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 23280 0.72 0.150326
Target:  5'- uGGCGGUugCCGCaGCCCGCGC-CGAa- -3'
miRNA:   3'- gCUGCUA--GGCGaCGGGCGCGcGCUag -5'
28026 5' -60.2 NC_005887.1 + 29191 0.7 0.217861
Target:  5'- gCGAgGAUCUGCgcgGCCUuaaGCuGCGCGAUg -3'
miRNA:   3'- -GCUgCUAGGCGa--CGGG---CG-CGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 40903 0.7 0.223567
Target:  5'- aCGACGAgCCGCcgaagGCuaCCGCGCGCGc-- -3'
miRNA:   3'- -GCUGCUaGGCGa----CG--GGCGCGCGCuag -5'
28026 5' -60.2 NC_005887.1 + 27140 0.7 0.229399
Target:  5'- uCGGCGAUCaCGCggccgaacgGCCaCGgGCGCGGg- -3'
miRNA:   3'- -GCUGCUAG-GCGa--------CGG-GCgCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 22518 0.7 0.234757
Target:  5'- uCGGCGGUgaaucuguucaagCCGCUGCgcaugCCGUcCGCGAUCg -3'
miRNA:   3'- -GCUGCUA-------------GGCGACG-----GGCGcGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 4626 0.7 0.235359
Target:  5'- gCGGCG--CCGgUGgCCGCcgGCGCGAUCa -3'
miRNA:   3'- -GCUGCuaGGCgACgGGCG--CGCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.