miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 415 0.68 0.287802
Target:  5'- aGACGcgCCGCgccGCCCGCuguuGCuGCGcUCg -3'
miRNA:   3'- gCUGCuaGGCGa--CGGGCG----CG-CGCuAG- -5'
28026 5' -60.2 NC_005887.1 + 601 0.66 0.409748
Target:  5'- uCGugGucUUCGaccagaGCCCGCGCGCcggGAUCg -3'
miRNA:   3'- -GCugCu-AGGCga----CGGGCGCGCG---CUAG- -5'
28026 5' -60.2 NC_005887.1 + 1062 0.69 0.254021
Target:  5'- cCGGCGGcagcagCGC-GCCCGUGCGCaGGUCg -3'
miRNA:   3'- -GCUGCUag----GCGaCGGGCGCGCG-CUAG- -5'
28026 5' -60.2 NC_005887.1 + 1135 0.69 0.260507
Target:  5'- uGACGAagCCGC-GCgUGCGCGUGAa- -3'
miRNA:   3'- gCUGCUa-GGCGaCGgGCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 1421 0.66 0.374239
Target:  5'- uCGGCGuugCCGaacucgGUgCGCGCGCGGUa -3'
miRNA:   3'- -GCUGCua-GGCga----CGgGCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 4626 0.7 0.235359
Target:  5'- gCGGCG--CCGgUGgCCGCcgGCGCGAUCa -3'
miRNA:   3'- -GCUGCuaGGCgACgGGCG--CGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 5340 0.74 0.108213
Target:  5'- cCGACGuGUUCGCguacgGCCUGCGCGUGcUCg -3'
miRNA:   3'- -GCUGC-UAGGCGa----CGGGCGCGCGCuAG- -5'
28026 5' -60.2 NC_005887.1 + 9226 0.68 0.294968
Target:  5'- aGAuCGGUCCuagcgaaCUGCgCCGCGUcgGCGAUCg -3'
miRNA:   3'- gCU-GCUAGGc------GACG-GGCGCG--CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 10844 0.69 0.273882
Target:  5'- -uGCGuucAUCCGC-GCCgCGCGCGCGGcaaUCg -3'
miRNA:   3'- gcUGC---UAGGCGaCGG-GCGCGCGCU---AG- -5'
28026 5' -60.2 NC_005887.1 + 11616 0.68 0.287802
Target:  5'- aCGGCGAagUCGCgaagGCCaCGCaGCGCGAc- -3'
miRNA:   3'- -GCUGCUa-GGCGa---CGG-GCG-CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 11726 0.66 0.407013
Target:  5'- -aACGAUCCGgauCUGCCggaCGCGCugcgcgaguugcucGCGAUCc -3'
miRNA:   3'- gcUGCUAGGC---GACGG---GCGCG--------------CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 12423 0.66 0.382919
Target:  5'- aCGACa--CCGCgg--CGCGCGCGAUCg -3'
miRNA:   3'- -GCUGcuaGGCGacggGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 13553 0.67 0.340874
Target:  5'- uCGGCGAUgCGCUGCCgcccgagcaggcCGaCGaCGCGAa- -3'
miRNA:   3'- -GCUGCUAgGCGACGG------------GC-GC-GCGCUag -5'
28026 5' -60.2 NC_005887.1 + 13772 0.66 0.374239
Target:  5'- uCGuCGA-CCGC-GUCCGCGCaGCGggCg -3'
miRNA:   3'- -GCuGCUaGGCGaCGGGCGCG-CGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 13909 0.7 0.229399
Target:  5'- cCGACGAagggucagcUUCGCgagcacgagcGCCUGCGCGCGcUCg -3'
miRNA:   3'- -GCUGCU---------AGGCGa---------CGGGCGCGCGCuAG- -5'
28026 5' -60.2 NC_005887.1 + 14667 0.67 0.332876
Target:  5'- uCGcCGGUUcgaCGCUGCCC-CGCaCGAUCg -3'
miRNA:   3'- -GCuGCUAG---GCGACGGGcGCGcGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 14684 0.69 0.273882
Target:  5'- aGACGAUCaa--GCCgCGCGCGCGGc- -3'
miRNA:   3'- gCUGCUAGgcgaCGG-GCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 15008 0.68 0.317296
Target:  5'- -uGCGcgCCGCUGCgCGUgGCGCaGUCg -3'
miRNA:   3'- gcUGCuaGGCGACGgGCG-CGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 15097 0.72 0.167401
Target:  5'- uGGCGA--CGCggGCCgGCGCGCGAUg -3'
miRNA:   3'- gCUGCUagGCGa-CGGgCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 15386 0.68 0.317296
Target:  5'- uCGACGccgCGCUGaUCGCGCGCGggCa -3'
miRNA:   3'- -GCUGCuagGCGACgGGCGCGCGCuaG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.