Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28026 | 5' | -60.2 | NC_005887.1 | + | 415 | 0.68 | 0.287802 |
Target: 5'- aGACGcgCCGCgccGCCCGCuguuGCuGCGcUCg -3' miRNA: 3'- gCUGCuaGGCGa--CGGGCG----CG-CGCuAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 601 | 0.66 | 0.409748 |
Target: 5'- uCGugGucUUCGaccagaGCCCGCGCGCcggGAUCg -3' miRNA: 3'- -GCugCu-AGGCga----CGGGCGCGCG---CUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 1062 | 0.69 | 0.254021 |
Target: 5'- cCGGCGGcagcagCGC-GCCCGUGCGCaGGUCg -3' miRNA: 3'- -GCUGCUag----GCGaCGGGCGCGCG-CUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 1135 | 0.69 | 0.260507 |
Target: 5'- uGACGAagCCGC-GCgUGCGCGUGAa- -3' miRNA: 3'- gCUGCUa-GGCGaCGgGCGCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 1421 | 0.66 | 0.374239 |
Target: 5'- uCGGCGuugCCGaacucgGUgCGCGCGCGGUa -3' miRNA: 3'- -GCUGCua-GGCga----CGgGCGCGCGCUAg -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 4626 | 0.7 | 0.235359 |
Target: 5'- gCGGCG--CCGgUGgCCGCcgGCGCGAUCa -3' miRNA: 3'- -GCUGCuaGGCgACgGGCG--CGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 5340 | 0.74 | 0.108213 |
Target: 5'- cCGACGuGUUCGCguacgGCCUGCGCGUGcUCg -3' miRNA: 3'- -GCUGC-UAGGCGa----CGGGCGCGCGCuAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 9226 | 0.68 | 0.294968 |
Target: 5'- aGAuCGGUCCuagcgaaCUGCgCCGCGUcgGCGAUCg -3' miRNA: 3'- gCU-GCUAGGc------GACG-GGCGCG--CGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 10844 | 0.69 | 0.273882 |
Target: 5'- -uGCGuucAUCCGC-GCCgCGCGCGCGGcaaUCg -3' miRNA: 3'- gcUGC---UAGGCGaCGG-GCGCGCGCU---AG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 11616 | 0.68 | 0.287802 |
Target: 5'- aCGGCGAagUCGCgaagGCCaCGCaGCGCGAc- -3' miRNA: 3'- -GCUGCUa-GGCGa---CGG-GCG-CGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 11726 | 0.66 | 0.407013 |
Target: 5'- -aACGAUCCGgauCUGCCggaCGCGCugcgcgaguugcucGCGAUCc -3' miRNA: 3'- gcUGCUAGGC---GACGG---GCGCG--------------CGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 12423 | 0.66 | 0.382919 |
Target: 5'- aCGACa--CCGCgg--CGCGCGCGAUCg -3' miRNA: 3'- -GCUGcuaGGCGacggGCGCGCGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 13553 | 0.67 | 0.340874 |
Target: 5'- uCGGCGAUgCGCUGCCgcccgagcaggcCGaCGaCGCGAa- -3' miRNA: 3'- -GCUGCUAgGCGACGG------------GC-GC-GCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 13772 | 0.66 | 0.374239 |
Target: 5'- uCGuCGA-CCGC-GUCCGCGCaGCGggCg -3' miRNA: 3'- -GCuGCUaGGCGaCGGGCGCG-CGCuaG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 13909 | 0.7 | 0.229399 |
Target: 5'- cCGACGAagggucagcUUCGCgagcacgagcGCCUGCGCGCGcUCg -3' miRNA: 3'- -GCUGCU---------AGGCGa---------CGGGCGCGCGCuAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 14667 | 0.67 | 0.332876 |
Target: 5'- uCGcCGGUUcgaCGCUGCCC-CGCaCGAUCg -3' miRNA: 3'- -GCuGCUAG---GCGACGGGcGCGcGCUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 14684 | 0.69 | 0.273882 |
Target: 5'- aGACGAUCaa--GCCgCGCGCGCGGc- -3' miRNA: 3'- gCUGCUAGgcgaCGG-GCGCGCGCUag -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 15008 | 0.68 | 0.317296 |
Target: 5'- -uGCGcgCCGCUGCgCGUgGCGCaGUCg -3' miRNA: 3'- gcUGCuaGGCGACGgGCG-CGCGcUAG- -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 15097 | 0.72 | 0.167401 |
Target: 5'- uGGCGA--CGCggGCCgGCGCGCGAUg -3' miRNA: 3'- gCUGCUagGCGa-CGGgCGCGCGCUAg -5' |
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28026 | 5' | -60.2 | NC_005887.1 | + | 15386 | 0.68 | 0.317296 |
Target: 5'- uCGACGccgCGCUGaUCGCGCGCGggCa -3' miRNA: 3'- -GCUGCuagGCGACgGGCGCGCGCuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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