miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 601 0.66 0.409748
Target:  5'- uCGugGucUUCGaccagaGCCCGCGCGCcggGAUCg -3'
miRNA:   3'- -GCugCu-AGGCga----CGGGCGCGCG---CUAG- -5'
28026 5' -60.2 NC_005887.1 + 20076 0.67 0.325017
Target:  5'- cCGACGAgaaaUCCGaucGCCUGCuGCGCGccaccGUCg -3'
miRNA:   3'- -GCUGCU----AGGCga-CGGGCG-CGCGC-----UAG- -5'
28026 5' -60.2 NC_005887.1 + 15008 0.68 0.317296
Target:  5'- -uGCGcgCCGCUGCgCGUgGCGCaGUCg -3'
miRNA:   3'- gcUGCuaGGCGACGgGCG-CGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 26949 1.09 0.00024
Target:  5'- uCGACGAUCCGCUGCCCGCGCGCGAUCa -3'
miRNA:   3'- -GCUGCUAGGCGACGGGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 28959 0.66 0.382919
Target:  5'- cCGACG-UCCGCcgcGCCgGCcuucaGCGCGAg- -3'
miRNA:   3'- -GCUGCuAGGCGa--CGGgCG-----CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 27831 0.66 0.374239
Target:  5'- cCGACGG-CCGC-GCCUGCaaGCGGa- -3'
miRNA:   3'- -GCUGCUaGGCGaCGGGCGcgCGCUag -5'
28026 5' -60.2 NC_005887.1 + 33640 0.66 0.374239
Target:  5'- gCGACGAagCGCUuaCCGCcGCgGCgGAUCg -3'
miRNA:   3'- -GCUGCUagGCGAcgGGCG-CG-CG-CUAG- -5'
28026 5' -60.2 NC_005887.1 + 1421 0.66 0.374239
Target:  5'- uCGGCGuugCCGaacucgGUgCGCGCGCGGUa -3'
miRNA:   3'- -GCUGCua-GGCga----CGgGCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 41698 0.67 0.357283
Target:  5'- uCGGCGGUCaugCGCgUGCgcucgCCGCGCGCuuUCa -3'
miRNA:   3'- -GCUGCUAG---GCG-ACG-----GGCGCGCGcuAG- -5'
28026 5' -60.2 NC_005887.1 + 16835 0.67 0.332876
Target:  5'- gCGACGAUuaugCCGCcaCCCGCcGCGCcAUCg -3'
miRNA:   3'- -GCUGCUA----GGCGacGGGCG-CGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 33508 0.67 0.355618
Target:  5'- cCGGCGuUCacaaGCUGCCCGCGauucacgaaaaaGCGGa- -3'
miRNA:   3'- -GCUGCuAGg---CGACGGGCGCg-----------CGCUag -5'
28026 5' -60.2 NC_005887.1 + 25764 0.67 0.365693
Target:  5'- uGGCGAUuuGCaguUGCuuGCGgGCccGGUCg -3'
miRNA:   3'- gCUGCUAggCG---ACGggCGCgCG--CUAG- -5'
28026 5' -60.2 NC_005887.1 + 11726 0.66 0.407013
Target:  5'- -aACGAUCCGgauCUGCCggaCGCGCugcgcgaguugcucGCGAUCc -3'
miRNA:   3'- gcUGCUAGGC---GACGG---GCGCG--------------CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 34116 0.67 0.354787
Target:  5'- gGAUGuugCCGUUcucgaugcugaacaGCCCGCGCGUG-UCg -3'
miRNA:   3'- gCUGCua-GGCGA--------------CGGGCGCGCGCuAG- -5'
28026 5' -60.2 NC_005887.1 + 41794 0.66 0.400675
Target:  5'- cCGGCGGUCuucgCGCUGUauccggcgCgGCGCGCGGc- -3'
miRNA:   3'- -GCUGCUAG----GCGACG--------GgCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 29310 0.67 0.365693
Target:  5'- gCGGCGA--CGCUGgCCGUGUG-GAUCu -3'
miRNA:   3'- -GCUGCUagGCGACgGGCGCGCgCUAG- -5'
28026 5' -60.2 NC_005887.1 + 15632 0.67 0.340068
Target:  5'- --cCGGUCUaugucgaGCUGCCCGCggccGCGCGAc- -3'
miRNA:   3'- gcuGCUAGG-------CGACGGGCG----CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 26101 0.68 0.317296
Target:  5'- uCGGCGA--CGgUGCCCGUGCGCu--- -3'
miRNA:   3'- -GCUGCUagGCgACGGGCGCGCGcuag -5'
28026 5' -60.2 NC_005887.1 + 18948 0.66 0.391732
Target:  5'- uCGACGcgCUGCUGCggCUGCcagcggcaGCGCGAg- -3'
miRNA:   3'- -GCUGCuaGGCGACG--GGCG--------CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 13772 0.66 0.374239
Target:  5'- uCGuCGA-CCGC-GUCCGCGCaGCGggCg -3'
miRNA:   3'- -GCuGCUaGGCGaCGGGCGCG-CGCuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.