miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 11616 0.68 0.287802
Target:  5'- aCGGCGAagUCGCgaagGCCaCGCaGCGCGAc- -3'
miRNA:   3'- -GCUGCUa-GGCGa---CGG-GCG-CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 26728 0.68 0.302272
Target:  5'- uCGGCGAgccCgGCcGCCUGCuGCGCGAc- -3'
miRNA:   3'- -GCUGCUa--GgCGaCGGGCG-CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 16835 0.67 0.332876
Target:  5'- gCGACGAUuaugCCGCcaCCCGCcGCGCcAUCg -3'
miRNA:   3'- -GCUGCUA----GGCGacGGGCG-CGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 41698 0.67 0.357283
Target:  5'- uCGGCGGUCaugCGCgUGCgcucgCCGCGCGCuuUCa -3'
miRNA:   3'- -GCUGCUAG---GCG-ACG-----GGCGCGCGcuAG- -5'
28026 5' -60.2 NC_005887.1 + 38059 0.71 0.201487
Target:  5'- uCGGCGAggaugUCGac-CUCGCGCGCGAUCa -3'
miRNA:   3'- -GCUGCUa----GGCgacGGGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 34985 0.69 0.267127
Target:  5'- gCGGCGuugUCGUcgGUCUGCaGCGCGAUCg -3'
miRNA:   3'- -GCUGCua-GGCGa-CGGGCG-CGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 15008 0.68 0.317296
Target:  5'- -uGCGcgCCGCUGCgCGUgGCGCaGUCg -3'
miRNA:   3'- gcUGCuaGGCGACGgGCG-CGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 25764 0.67 0.365693
Target:  5'- uGGCGAUuuGCaguUGCuuGCGgGCccGGUCg -3'
miRNA:   3'- gCUGCUAggCG---ACGggCGCgCG--CUAG- -5'
28026 5' -60.2 NC_005887.1 + 14684 0.69 0.273882
Target:  5'- aGACGAUCaa--GCCgCGCGCGCGGc- -3'
miRNA:   3'- gCUGCUAGgcgaCGG-GCGCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 29310 0.67 0.365693
Target:  5'- gCGGCGA--CGCUGgCCGUGUG-GAUCu -3'
miRNA:   3'- -GCUGCUagGCGACgGGCGCGCgCUAG- -5'
28026 5' -60.2 NC_005887.1 + 25329 0.68 0.308964
Target:  5'- --cCGAUCCGUUGCCaagcaccuugcucUGCGCGUggcgGAUCg -3'
miRNA:   3'- gcuGCUAGGCGACGG-------------GCGCGCG----CUAG- -5'
28026 5' -60.2 NC_005887.1 + 34250 0.68 0.287802
Target:  5'- uCGGCGAgcgCggcgaGCUGCgCGCGCGCuuUCg -3'
miRNA:   3'- -GCUGCUa--Gg----CGACGgGCGCGCGcuAG- -5'
28026 5' -60.2 NC_005887.1 + 26101 0.68 0.317296
Target:  5'- uCGGCGA--CGgUGCCCGUGCGCu--- -3'
miRNA:   3'- -GCUGCUagGCgACGGGCGCGCGcuag -5'
28026 5' -60.2 NC_005887.1 + 20076 0.67 0.325017
Target:  5'- cCGACGAgaaaUCCGaucGCCUGCuGCGCGccaccGUCg -3'
miRNA:   3'- -GCUGCU----AGGCga-CGGGCG-CGCGC-----UAG- -5'
28026 5' -60.2 NC_005887.1 + 15632 0.67 0.340068
Target:  5'- --cCGGUCUaugucgaGCUGCCCGCggccGCGCGAc- -3'
miRNA:   3'- gcuGCUAGG-------CGACGGGCG----CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 17796 0.67 0.357283
Target:  5'- aCGGCGAUCaugggCGCccggccgaaggUGCggCCGCGCGUGAUg -3'
miRNA:   3'- -GCUGCUAG-----GCG-----------ACG--GGCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 15097 0.72 0.167401
Target:  5'- uGGCGA--CGCggGCCgGCGCGCGAUg -3'
miRNA:   3'- gCUGCUagGCGa-CGGgCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 32310 0.71 0.19991
Target:  5'- gCGACauGAUgCCGCUGUucgugccagcgcggCCGCGCGUGAUg -3'
miRNA:   3'- -GCUG--CUA-GGCGACG--------------GGCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 39155 0.69 0.241449
Target:  5'- gCGGCccuUCuCGCUGUCCGgGCGCGGc- -3'
miRNA:   3'- -GCUGcu-AG-GCGACGGGCgCGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 39879 0.69 0.256599
Target:  5'- uCGAUGAUCCGCgucagcGCCuCgucgacggcgccguaGCGCGCGAg- -3'
miRNA:   3'- -GCUGCUAGGCGa-----CGG-G---------------CGCGCGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.