miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28026 5' -60.2 NC_005887.1 + 34116 0.67 0.354787
Target:  5'- gGAUGuugCCGUUcucgaugcugaacaGCCCGCGCGUG-UCg -3'
miRNA:   3'- gCUGCua-GGCGA--------------CGGGCGCGCGCuAG- -5'
28026 5' -60.2 NC_005887.1 + 41185 0.67 0.357283
Target:  5'- -cAUGAUCCGcCUGgcugcauccgaCCCGCGCGUcGUCg -3'
miRNA:   3'- gcUGCUAGGC-GAC-----------GGGCGCGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 41632 0.67 0.34901
Target:  5'- uGAgGAUCUGCUGCguCUGCGCG-GcgCa -3'
miRNA:   3'- gCUgCUAGGCGACG--GGCGCGCgCuaG- -5'
28026 5' -60.2 NC_005887.1 + 13553 0.67 0.340874
Target:  5'- uCGGCGAUgCGCUGCCgcccgagcaggcCGaCGaCGCGAa- -3'
miRNA:   3'- -GCUGCUAgGCGACGG------------GC-GC-GCGCUag -5'
28026 5' -60.2 NC_005887.1 + 14667 0.67 0.332876
Target:  5'- uCGcCGGUUcgaCGCUGCCC-CGCaCGAUCg -3'
miRNA:   3'- -GCuGCUAG---GCGACGGGcGCGcGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 33508 0.67 0.355618
Target:  5'- cCGGCGuUCacaaGCUGCCCGCGauucacgaaaaaGCGGa- -3'
miRNA:   3'- -GCUGCuAGg---CGACGGGCGCg-----------CGCUag -5'
28026 5' -60.2 NC_005887.1 + 17796 0.67 0.357283
Target:  5'- aCGGCGAUCaugggCGCccggccgaaggUGCggCCGCGCGUGAUg -3'
miRNA:   3'- -GCUGCUAG-----GCG-----------ACG--GGCGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 41698 0.67 0.357283
Target:  5'- uCGGCGGUCaugCGCgUGCgcucgCCGCGCGCuuUCa -3'
miRNA:   3'- -GCUGCUAG---GCG-ACG-----GGCGCGCGcuAG- -5'
28026 5' -60.2 NC_005887.1 + 25764 0.67 0.365693
Target:  5'- uGGCGAUuuGCaguUGCuuGCGgGCccGGUCg -3'
miRNA:   3'- gCUGCUAggCG---ACGggCGCgCG--CUAG- -5'
28026 5' -60.2 NC_005887.1 + 11616 0.68 0.287802
Target:  5'- aCGGCGAagUCGCgaagGCCaCGCaGCGCGAc- -3'
miRNA:   3'- -GCUGCUa-GGCGa---CGG-GCG-CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 26101 0.68 0.317296
Target:  5'- uCGGCGA--CGgUGCCCGUGCGCu--- -3'
miRNA:   3'- -GCUGCUagGCgACGGGCGCGCGcuag -5'
28026 5' -60.2 NC_005887.1 + 15008 0.68 0.317296
Target:  5'- -uGCGcgCCGCUGCgCGUgGCGCaGUCg -3'
miRNA:   3'- gcUGCuaGGCGACGgGCG-CGCGcUAG- -5'
28026 5' -60.2 NC_005887.1 + 25329 0.68 0.308964
Target:  5'- --cCGAUCCGUUGCCaagcaccuugcucUGCGCGUggcgGAUCg -3'
miRNA:   3'- gcuGCUAGGCGACGG-------------GCGCGCG----CUAG- -5'
28026 5' -60.2 NC_005887.1 + 26728 0.68 0.302272
Target:  5'- uCGGCGAgccCgGCcGCCUGCuGCGCGAc- -3'
miRNA:   3'- -GCUGCUa--GgCGaCGGGCG-CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 40112 0.68 0.317296
Target:  5'- gGACGAgCCGCaggacGCCUacaGCGUGCGGUg -3'
miRNA:   3'- gCUGCUaGGCGa----CGGG---CGCGCGCUAg -5'
28026 5' -60.2 NC_005887.1 + 15386 0.68 0.317296
Target:  5'- uCGACGccgCGCUGaUCGCGCGCGggCa -3'
miRNA:   3'- -GCUGCuagGCGACgGGCGCGCGCuaG- -5'
28026 5' -60.2 NC_005887.1 + 28568 0.68 0.309715
Target:  5'- aGGCG--UCGCcGCCCGCuGCGCGGa- -3'
miRNA:   3'- gCUGCuaGGCGaCGGGCG-CGCGCUag -5'
28026 5' -60.2 NC_005887.1 + 30768 0.68 0.302272
Target:  5'- uCGACcGUgCGCgcgGCgaguuccuuCUGCGCGCGAUCa -3'
miRNA:   3'- -GCUGcUAgGCGa--CG---------GGCGCGCGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 9226 0.68 0.294968
Target:  5'- aGAuCGGUCCuagcgaaCUGCgCCGCGUcgGCGAUCg -3'
miRNA:   3'- gCU-GCUAGGc------GACG-GGCGCG--CGCUAG- -5'
28026 5' -60.2 NC_005887.1 + 415 0.68 0.287802
Target:  5'- aGACGcgCCGCgccGCCCGCuguuGCuGCGcUCg -3'
miRNA:   3'- gCUGCuaGGCGa--CGGGCG----CG-CGCuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.