miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28027 3' -56.4 NC_005887.1 + 36991 0.7 0.34464
Target:  5'- gAGcUCGcCGGCGAgCaCGcGCAGGCCg -3'
miRNA:   3'- gUCaAGC-GCCGCUgGaGCuUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 31696 0.7 0.34464
Target:  5'- uGGUUCGuCGGCaGaACCUCGGACGcgugcGGCg -3'
miRNA:   3'- gUCAAGC-GCCG-C-UGGAGCUUGU-----CCGg -5'
28027 3' -56.4 NC_005887.1 + 13624 0.71 0.336387
Target:  5'- gCGGcgCGCGGCGGCCgcacucagcCGAGCAGcaCCg -3'
miRNA:   3'- -GUCaaGCGCCGCUGGa--------GCUUGUCc-GG- -5'
28027 3' -56.4 NC_005887.1 + 26087 0.66 0.590686
Target:  5'- gCGGcccgCGCGGCGuuucaugGCgUCGAGCAGGa- -3'
miRNA:   3'- -GUCaa--GCGCCGC-------UGgAGCUUGUCCgg -5'
28027 3' -56.4 NC_005887.1 + 29486 0.74 0.206757
Target:  5'- aCAGcacgaugUCGUagccGGCGGCCUCGAcgGCGGGCg -3'
miRNA:   3'- -GUCa------AGCG----CCGCUGGAGCU--UGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 16861 0.66 0.580809
Target:  5'- aGGUguacCGCGGCGcggacGgCUCGA-CAGGCa -3'
miRNA:   3'- gUCAa---GCGCCGC-----UgGAGCUuGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 13553 0.68 0.454543
Target:  5'- uCGGcgaugCGCuGCcGCC-CGAGCAGGCCg -3'
miRNA:   3'- -GUCaa---GCGcCGcUGGaGCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 14718 0.68 0.454543
Target:  5'- -cGggCGCGGCGA--UCGcGCAGGCg -3'
miRNA:   3'- guCaaGCGCCGCUggAGCuUGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 40798 0.67 0.537415
Target:  5'- aGGUUCGUGGCGGCgacgcgccgCUCGAcgaugACgAGGUg -3'
miRNA:   3'- gUCAAGCGCCGCUG---------GAGCU-----UG-UCCGg -5'
28027 3' -56.4 NC_005887.1 + 14337 0.66 0.602796
Target:  5'- aGGUgaaCGCGGCGAUCgUGaAGCAGcguGCCg -3'
miRNA:   3'- gUCAa--GCGCCGCUGGaGC-UUGUC---CGG- -5'
28027 3' -56.4 NC_005887.1 + 11393 0.67 0.520361
Target:  5'- cCGGagCGCuGGCGGCCggcgccgccaaggcaUCGucugagcgccAACAGGCCg -3'
miRNA:   3'- -GUCaaGCG-CCGCUGG---------------AGC----------UUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 34722 0.67 0.530996
Target:  5'- gCGGUgCGCGGCGAuguacauguugcCUUCGAAgccgucgaaguccuuCAGGUCg -3'
miRNA:   3'- -GUCAaGCGCCGCU------------GGAGCUU---------------GUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 18547 0.67 0.505615
Target:  5'- uCGGUggGCGGCGGCgC-CGGcuucGCGGGCg -3'
miRNA:   3'- -GUCAagCGCCGCUG-GaGCU----UGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 3762 0.67 0.505615
Target:  5'- gCAGUUCGCGuCGuACuggCUCGAcgaGGGCCg -3'
miRNA:   3'- -GUCAAGCGCcGC-UG---GAGCUug-UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 33829 0.67 0.505615
Target:  5'- uCAGgucggCGCGGCGAUCgaaCGcauGCAGGgCg -3'
miRNA:   3'- -GUCaa---GCGCCGCUGGa--GCu--UGUCCgG- -5'
28027 3' -56.4 NC_005887.1 + 9040 0.68 0.495193
Target:  5'- -cGUUUGuCGGCGGCC-CGuuCGcGGCCg -3'
miRNA:   3'- guCAAGC-GCCGCUGGaGCuuGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 11559 0.68 0.48487
Target:  5'- gCAGcgCGCGGCGGUCgCGGAauCGGGCUu -3'
miRNA:   3'- -GUCaaGCGCCGCUGGaGCUU--GUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 24966 0.68 0.474651
Target:  5'- ---cUUGCGcGCGGCCgCGAgggACAGGUCg -3'
miRNA:   3'- gucaAGCGC-CGCUGGaGCU---UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 5809 0.66 0.591785
Target:  5'- cCAGacgGCGGCGAUCgagUCGGcGCGGGUCg -3'
miRNA:   3'- -GUCaagCGCCGCUGG---AGCU-UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 31117 0.68 0.463535
Target:  5'- ---cUCGCagagcagGGCGAgCUugcCGGGCAGGCCg -3'
miRNA:   3'- gucaAGCG-------CCGCUgGA---GCUUGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.