miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28027 3' -56.4 NC_005887.1 + 11518 0.69 0.406395
Target:  5'- ----gCGCGGCaugcagaugGACgUCGAACuGGCCg -3'
miRNA:   3'- gucaaGCGCCG---------CUGgAGCUUGuCCGG- -5'
28027 3' -56.4 NC_005887.1 + 39835 0.71 0.304829
Target:  5'- gCAGcgUGCGGCaGuCCgggugcaCGAGCAGGCCg -3'
miRNA:   3'- -GUCaaGCGCCG-CuGGa------GCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 5008 0.69 0.415769
Target:  5'- gCAGgaUGCGGCGACCgaugcCAGuGCCg -3'
miRNA:   3'- -GUCaaGCGCCGCUGGagcuuGUC-CGG- -5'
28027 3' -56.4 NC_005887.1 + 34524 0.67 0.537415
Target:  5'- ---gUCGCuGCGACCaCGGGCuuuuGGGCCc -3'
miRNA:   3'- gucaAGCGcCGCUGGaGCUUG----UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 24341 0.71 0.320317
Target:  5'- aAGcgCGCGGCGGuCCcauUCGGuCAGGCUg -3'
miRNA:   3'- gUCaaGCGCCGCU-GG---AGCUuGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 892 0.7 0.388053
Target:  5'- gCAGauccucgCGCGGCGugC-CGAGCAGcGCa -3'
miRNA:   3'- -GUCaa-----GCGCCGCugGaGCUUGUC-CGg -5'
28027 3' -56.4 NC_005887.1 + 27983 0.72 0.261837
Target:  5'- -----aGCGGCGA-CUCGAACAGGUg -3'
miRNA:   3'- gucaagCGCCGCUgGAGCUUGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 343 0.81 0.07124
Target:  5'- ----cCGCGGCGACaCUCGAcgugggccGCAGGCCg -3'
miRNA:   3'- gucaaGCGCCGCUG-GAGCU--------UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 1086 0.67 0.548171
Target:  5'- gCAGgUCGaCGGCGccauuGCCgacgcCGAGCAGGUg -3'
miRNA:   3'- -GUCaAGC-GCCGC-----UGGa----GCUUGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 6288 0.67 0.558994
Target:  5'- ---aUCGaCGGCGugCgCGAGCgcgucgAGGCCu -3'
miRNA:   3'- gucaAGC-GCCGCugGaGCUUG------UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 33297 0.67 0.526732
Target:  5'- ---gUCGCuguucaCGGCCgCGAACGGGCCg -3'
miRNA:   3'- gucaAGCGcc----GCUGGaGCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 41523 0.68 0.474651
Target:  5'- --cUUCGCGGCcgcGAUCgcgCGAGCAuGGCUg -3'
miRNA:   3'- gucAAGCGCCG---CUGGa--GCUUGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 11857 0.67 0.537415
Target:  5'- gCAGuUUUGCGGUGcGCaaCGcACGGGCCg -3'
miRNA:   3'- -GUC-AAGCGCCGC-UGgaGCuUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 36991 0.7 0.34464
Target:  5'- gAGcUCGcCGGCGAgCaCGcGCAGGCCg -3'
miRNA:   3'- gUCaAGC-GCCGCUgGaGCuUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 26087 0.66 0.590686
Target:  5'- gCGGcccgCGCGGCGuuucaugGCgUCGAGCAGGa- -3'
miRNA:   3'- -GUCaa--GCGCCGC-------UGgAGCUUGUCCgg -5'
28027 3' -56.4 NC_005887.1 + 16861 0.66 0.580809
Target:  5'- aGGUguacCGCGGCGcggacGgCUCGA-CAGGCa -3'
miRNA:   3'- gUCAa---GCGCCGC-----UgGAGCUuGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 15265 0.66 0.580809
Target:  5'- gCAGUgcugCGCGGCGAgcguCCgccggCGAACGagacuGCCg -3'
miRNA:   3'- -GUCAa---GCGCCGCU----GGa----GCUUGUc----CGG- -5'
28027 3' -56.4 NC_005887.1 + 40333 0.67 0.537415
Target:  5'- -cGUUCGCcGCcgaaauggacuGGCCgUCGAGCGcGGCCg -3'
miRNA:   3'- guCAAGCGcCG-----------CUGG-AGCUUGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 14718 0.68 0.454543
Target:  5'- -cGggCGCGGCGA--UCGcGCAGGCg -3'
miRNA:   3'- guCaaGCGCCGCUggAGCuUGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 31117 0.68 0.463535
Target:  5'- ---cUCGCagagcagGGCGAgCUugcCGGGCAGGCCg -3'
miRNA:   3'- gucaAGCG-------CCGCUgGA---GCUUGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.