miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28027 3' -56.4 NC_005887.1 + 29486 0.74 0.206757
Target:  5'- aCAGcacgaugUCGUagccGGCGGCCUCGAcgGCGGGCg -3'
miRNA:   3'- -GUCa------AGCG----CCGCUGGAGCU--UGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 24599 0.74 0.218062
Target:  5'- gGGUUCGCGGCGAUgaUCuuGC-GGCCg -3'
miRNA:   3'- gUCAAGCGCCGCUGg-AGcuUGuCCGG- -5'
28027 3' -56.4 NC_005887.1 + 13624 0.71 0.336387
Target:  5'- gCGGcgCGCGGCGGCCgcacucagcCGAGCAGcaCCg -3'
miRNA:   3'- -GUCaaGCGCCGCUGGa--------GCUUGUCc-GG- -5'
28027 3' -56.4 NC_005887.1 + 31696 0.7 0.34464
Target:  5'- uGGUUCGuCGGCaGaACCUCGGACGcgugcGGCg -3'
miRNA:   3'- gUCAAGC-GCCG-C-UGGAGCUUGU-----CCGg -5'
28027 3' -56.4 NC_005887.1 + 36991 0.7 0.34464
Target:  5'- gAGcUCGcCGGCGAgCaCGcGCAGGCCg -3'
miRNA:   3'- gUCaAGC-GCCGCUgGaGCuUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 16166 0.69 0.397156
Target:  5'- gAGUgCGCGaGCGAUCgaggCGAACcugcgcgaagAGGCCg -3'
miRNA:   3'- gUCAaGCGC-CGCUGGa---GCUUG----------UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 11807 0.69 0.403609
Target:  5'- uCGGUUCguacgcuaaggcagGCGGCGGCCuguucUCGAgcagcACGGGCg -3'
miRNA:   3'- -GUCAAG--------------CGCCGCUGG-----AGCU-----UGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 31117 0.68 0.463535
Target:  5'- ---cUCGCagagcagGGCGAgCUugcCGGGCAGGCCg -3'
miRNA:   3'- gucaAGCG-------CCGCUgGA---GCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 14718 0.68 0.454543
Target:  5'- -cGggCGCGGCGA--UCGcGCAGGCg -3'
miRNA:   3'- guCaaGCGCCGCUggAGCuUGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 13553 0.68 0.454543
Target:  5'- uCGGcgaugCGCuGCcGCC-CGAGCAGGCCg -3'
miRNA:   3'- -GUCaa---GCGcCGcUGGaGCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 13176 0.68 0.444664
Target:  5'- gCAGacaGCGG-GAgCggUCGAGCAGGCCg -3'
miRNA:   3'- -GUCaagCGCCgCUgG--AGCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 10734 0.69 0.415769
Target:  5'- -uGUUCGaUGGCGACauggaaUCGGACuGGCg -3'
miRNA:   3'- guCAAGC-GCCGCUGg-----AGCUUGuCCGg -5'
28027 3' -56.4 NC_005887.1 + 2874 0.69 0.406395
Target:  5'- gCGGUggauaacgCGCaGGCGACgaCGGACAcgucGGCCg -3'
miRNA:   3'- -GUCAa-------GCG-CCGCUGgaGCUUGU----CCGG- -5'
28027 3' -56.4 NC_005887.1 + 38099 0.66 0.580809
Target:  5'- gCAGUUCagacuGCGuGCGGCCgagcgucggcgCGAGCAGcacGCCu -3'
miRNA:   3'- -GUCAAG-----CGC-CGCUGGa----------GCUUGUC---CGG- -5'
28027 3' -56.4 NC_005887.1 + 27421 0.66 0.602796
Target:  5'- gCAGcgCGCGGCGugCgUCGAucgcgagugauuGCAgcGGCa -3'
miRNA:   3'- -GUCaaGCGCCGCugG-AGCU------------UGU--CCGg -5'
28027 3' -56.4 NC_005887.1 + 2306 0.66 0.602796
Target:  5'- aCGGUaUCG-GGCGuaggccggccGCCUCGAGCcGcGCCa -3'
miRNA:   3'- -GUCA-AGCgCCGC----------UGGAGCUUGuC-CGG- -5'
28027 3' -56.4 NC_005887.1 + 12584 0.66 0.602796
Target:  5'- ----aCGCGGCGAuCCUCGcgauCAGcucGCCg -3'
miRNA:   3'- gucaaGCGCCGCU-GGAGCuu--GUC---CGG- -5'
28027 3' -56.4 NC_005887.1 + 27538 0.66 0.613832
Target:  5'- uCAGcgUCGCGGCcGCCagaUUGAuCGGGUCc -3'
miRNA:   3'- -GUCa-AGCGCCGcUGG---AGCUuGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 37533 0.66 0.613832
Target:  5'- uGGUUggCGCGGCagaacugcgcgaGAUCcgCGAGCAcGGCCu -3'
miRNA:   3'- gUCAA--GCGCCG------------CUGGa-GCUUGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 26025 1.12 0.000372
Target:  5'- gCAGUUCGCGGCGACCUCGAACAGGCCg -3'
miRNA:   3'- -GUCAAGCGCCGCUGGAGCUUGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.