Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28027 | 3' | -56.4 | NC_005887.1 | + | 40813 | 0.66 | 0.613832 |
Target: 5'- cCAGUccuUCGCGGU--CgUCGAcaGCAGGUCc -3' miRNA: 3'- -GUCA---AGCGCCGcuGgAGCU--UGUCCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 21250 | 0.69 | 0.434906 |
Target: 5'- -uGUUUGCGGCGACCgcgcCGAuaccguuCAaGCCa -3' miRNA: 3'- guCAAGCGCCGCUGGa---GCUu------GUcCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 5008 | 0.69 | 0.415769 |
Target: 5'- gCAGgaUGCGGCGACCgaugcCAGuGCCg -3' miRNA: 3'- -GUCaaGCGCCGCUGGagcuuGUC-CGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 26025 | 1.12 | 0.000372 |
Target: 5'- gCAGUUCGCGGCGACCUCGAACAGGCCg -3' miRNA: 3'- -GUCAAGCGCCGCUGGAGCUUGUCCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 2306 | 0.66 | 0.602796 |
Target: 5'- aCGGUaUCG-GGCGuaggccggccGCCUCGAGCcGcGCCa -3' miRNA: 3'- -GUCA-AGCgCCGC----------UGGAGCUUGuC-CGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 27421 | 0.66 | 0.602796 |
Target: 5'- gCAGcgCGCGGCGugCgUCGAucgcgagugauuGCAgcGGCa -3' miRNA: 3'- -GUCaaGCGCCGCugG-AGCU------------UGU--CCGg -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 33466 | 0.67 | 0.56334 |
Target: 5'- aGGUcCGCGagcgcguacggcgucGCGAUCUCGA-CGGGCg -3' miRNA: 3'- gUCAaGCGC---------------CGCUGGAGCUuGUCCGg -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 6288 | 0.67 | 0.558994 |
Target: 5'- ---aUCGaCGGCGugCgCGAGCgcgucgAGGCCu -3' miRNA: 3'- gucaAGC-GCCGCugGaGCUUG------UCCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 11857 | 0.67 | 0.537415 |
Target: 5'- gCAGuUUUGCGGUGcGCaaCGcACGGGCCg -3' miRNA: 3'- -GUC-AAGCGCCGC-UGgaGCuUGUCCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 26902 | 0.68 | 0.474651 |
Target: 5'- gCGGUcaUCGCGGCGACgUCGucCGGuugaCCg -3' miRNA: 3'- -GUCA--AGCGCCGCUGgAGCuuGUCc---GG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 19052 | 0.67 | 0.526732 |
Target: 5'- gCAGU--GCGGCGuuguuCUUCGGcGCGGGCUg -3' miRNA: 3'- -GUCAagCGCCGCu----GGAGCU-UGUCCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 34524 | 0.67 | 0.537415 |
Target: 5'- ---gUCGCuGCGACCaCGGGCuuuuGGGCCc -3' miRNA: 3'- gucaAGCGcCGCUGGaGCUUG----UCCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 37533 | 0.66 | 0.613832 |
Target: 5'- uGGUUggCGCGGCagaacugcgcgaGAUCcgCGAGCAcGGCCu -3' miRNA: 3'- gUCAA--GCGCCG------------CUGGa-GCUUGU-CCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 31035 | 0.67 | 0.526732 |
Target: 5'- gCGGUU-GCGGCGcucGCUgcCGAGCcGGCCg -3' miRNA: 3'- -GUCAAgCGCCGC---UGGa-GCUUGuCCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 27538 | 0.66 | 0.613832 |
Target: 5'- uCAGcgUCGCGGCcGCCagaUUGAuCGGGUCc -3' miRNA: 3'- -GUCa-AGCGCCGcUGG---AGCUuGUCCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 1086 | 0.67 | 0.548171 |
Target: 5'- gCAGgUCGaCGGCGccauuGCCgacgcCGAGCAGGUg -3' miRNA: 3'- -GUCaAGC-GCCGC-----UGGa----GCUUGUCCGg -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 41523 | 0.68 | 0.474651 |
Target: 5'- --cUUCGCGGCcgcGAUCgcgCGAGCAuGGCUg -3' miRNA: 3'- gucAAGCGCCG---CUGGa--GCUUGU-CCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 12398 | 0.69 | 0.432003 |
Target: 5'- -uGUUCGCGGCGcucgacACCgUCGAucccgagaucgugcGCgAGGCCc -3' miRNA: 3'- guCAAGCGCCGC------UGG-AGCU--------------UG-UCCGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 12584 | 0.66 | 0.602796 |
Target: 5'- ----aCGCGGCGAuCCUCGcgauCAGcucGCCg -3' miRNA: 3'- gucaaGCGCCGCU-GGAGCuu--GUC---CGG- -5' |
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28027 | 3' | -56.4 | NC_005887.1 | + | 38099 | 0.66 | 0.580809 |
Target: 5'- gCAGUUCagacuGCGuGCGGCCgagcgucggcgCGAGCAGcacGCCu -3' miRNA: 3'- -GUCAAG-----CGC-CGCUGGa----------GCUUGUC---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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