miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28027 3' -56.4 NC_005887.1 + 40813 0.66 0.613832
Target:  5'- cCAGUccuUCGCGGU--CgUCGAcaGCAGGUCc -3'
miRNA:   3'- -GUCA---AGCGCCGcuGgAGCU--UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 21250 0.69 0.434906
Target:  5'- -uGUUUGCGGCGACCgcgcCGAuaccguuCAaGCCa -3'
miRNA:   3'- guCAAGCGCCGCUGGa---GCUu------GUcCGG- -5'
28027 3' -56.4 NC_005887.1 + 5008 0.69 0.415769
Target:  5'- gCAGgaUGCGGCGACCgaugcCAGuGCCg -3'
miRNA:   3'- -GUCaaGCGCCGCUGGagcuuGUC-CGG- -5'
28027 3' -56.4 NC_005887.1 + 26025 1.12 0.000372
Target:  5'- gCAGUUCGCGGCGACCUCGAACAGGCCg -3'
miRNA:   3'- -GUCAAGCGCCGCUGGAGCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 2306 0.66 0.602796
Target:  5'- aCGGUaUCG-GGCGuaggccggccGCCUCGAGCcGcGCCa -3'
miRNA:   3'- -GUCA-AGCgCCGC----------UGGAGCUUGuC-CGG- -5'
28027 3' -56.4 NC_005887.1 + 27421 0.66 0.602796
Target:  5'- gCAGcgCGCGGCGugCgUCGAucgcgagugauuGCAgcGGCa -3'
miRNA:   3'- -GUCaaGCGCCGCugG-AGCU------------UGU--CCGg -5'
28027 3' -56.4 NC_005887.1 + 33466 0.67 0.56334
Target:  5'- aGGUcCGCGagcgcguacggcgucGCGAUCUCGA-CGGGCg -3'
miRNA:   3'- gUCAaGCGC---------------CGCUGGAGCUuGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 6288 0.67 0.558994
Target:  5'- ---aUCGaCGGCGugCgCGAGCgcgucgAGGCCu -3'
miRNA:   3'- gucaAGC-GCCGCugGaGCUUG------UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 11857 0.67 0.537415
Target:  5'- gCAGuUUUGCGGUGcGCaaCGcACGGGCCg -3'
miRNA:   3'- -GUC-AAGCGCCGC-UGgaGCuUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 26902 0.68 0.474651
Target:  5'- gCGGUcaUCGCGGCGACgUCGucCGGuugaCCg -3'
miRNA:   3'- -GUCA--AGCGCCGCUGgAGCuuGUCc---GG- -5'
28027 3' -56.4 NC_005887.1 + 19052 0.67 0.526732
Target:  5'- gCAGU--GCGGCGuuguuCUUCGGcGCGGGCUg -3'
miRNA:   3'- -GUCAagCGCCGCu----GGAGCU-UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 34524 0.67 0.537415
Target:  5'- ---gUCGCuGCGACCaCGGGCuuuuGGGCCc -3'
miRNA:   3'- gucaAGCGcCGCUGGaGCUUG----UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 37533 0.66 0.613832
Target:  5'- uGGUUggCGCGGCagaacugcgcgaGAUCcgCGAGCAcGGCCu -3'
miRNA:   3'- gUCAA--GCGCCG------------CUGGa-GCUUGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 31035 0.67 0.526732
Target:  5'- gCGGUU-GCGGCGcucGCUgcCGAGCcGGCCg -3'
miRNA:   3'- -GUCAAgCGCCGC---UGGa-GCUUGuCCGG- -5'
28027 3' -56.4 NC_005887.1 + 27538 0.66 0.613832
Target:  5'- uCAGcgUCGCGGCcGCCagaUUGAuCGGGUCc -3'
miRNA:   3'- -GUCa-AGCGCCGcUGG---AGCUuGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 1086 0.67 0.548171
Target:  5'- gCAGgUCGaCGGCGccauuGCCgacgcCGAGCAGGUg -3'
miRNA:   3'- -GUCaAGC-GCCGC-----UGGa----GCUUGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 41523 0.68 0.474651
Target:  5'- --cUUCGCGGCcgcGAUCgcgCGAGCAuGGCUg -3'
miRNA:   3'- gucAAGCGCCG---CUGGa--GCUUGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 12398 0.69 0.432003
Target:  5'- -uGUUCGCGGCGcucgacACCgUCGAucccgagaucgugcGCgAGGCCc -3'
miRNA:   3'- guCAAGCGCCGC------UGG-AGCU--------------UG-UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 12584 0.66 0.602796
Target:  5'- ----aCGCGGCGAuCCUCGcgauCAGcucGCCg -3'
miRNA:   3'- gucaaGCGCCGCU-GGAGCuu--GUC---CGG- -5'
28027 3' -56.4 NC_005887.1 + 38099 0.66 0.580809
Target:  5'- gCAGUUCagacuGCGuGCGGCCgagcgucggcgCGAGCAGcacGCCu -3'
miRNA:   3'- -GUCAAG-----CGC-CGCUGGa----------GCUUGUC---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.