miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28027 3' -56.4 NC_005887.1 + 40798 0.67 0.537415
Target:  5'- aGGUUCGUGGCGGCgacgcgccgCUCGAcgaugACgAGGUg -3'
miRNA:   3'- gUCAAGCGCCGCUG---------GAGCU-----UG-UCCGg -5'
28027 3' -56.4 NC_005887.1 + 34722 0.67 0.530996
Target:  5'- gCGGUgCGCGGCGAuguacauguugcCUUCGAAgccgucgaaguccuuCAGGUCg -3'
miRNA:   3'- -GUCAaGCGCCGCU------------GGAGCUU---------------GUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 33297 0.67 0.526732
Target:  5'- ---gUCGCuguucaCGGCCgCGAACGGGCCg -3'
miRNA:   3'- gucaAGCGcc----GCUGGaGCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 31035 0.67 0.526732
Target:  5'- gCGGUU-GCGGCGcucGCUgcCGAGCcGGCCg -3'
miRNA:   3'- -GUCAAgCGCCGC---UGGa-GCUUGuCCGG- -5'
28027 3' -56.4 NC_005887.1 + 19052 0.67 0.526732
Target:  5'- gCAGU--GCGGCGuuguuCUUCGGcGCGGGCUg -3'
miRNA:   3'- -GUCAagCGCCGCu----GGAGCU-UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 11393 0.67 0.520361
Target:  5'- cCGGagCGCuGGCGGCCggcgccgccaaggcaUCGucugagcgccAACAGGCCg -3'
miRNA:   3'- -GUCaaGCG-CCGCUGG---------------AGC----------UUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 33829 0.67 0.505615
Target:  5'- uCAGgucggCGCGGCGAUCgaaCGcauGCAGGgCg -3'
miRNA:   3'- -GUCaa---GCGCCGCUGGa--GCu--UGUCCgG- -5'
28027 3' -56.4 NC_005887.1 + 18547 0.67 0.505615
Target:  5'- uCGGUggGCGGCGGCgC-CGGcuucGCGGGCg -3'
miRNA:   3'- -GUCAagCGCCGCUG-GaGCU----UGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 3762 0.67 0.505615
Target:  5'- gCAGUUCGCGuCGuACuggCUCGAcgaGGGCCg -3'
miRNA:   3'- -GUCAAGCGCcGC-UG---GAGCUug-UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 9040 0.68 0.495193
Target:  5'- -cGUUUGuCGGCGGCC-CGuuCGcGGCCg -3'
miRNA:   3'- guCAAGC-GCCGCUGGaGCuuGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 11559 0.68 0.48487
Target:  5'- gCAGcgCGCGGCGGUCgCGGAauCGGGCUu -3'
miRNA:   3'- -GUCaaGCGCCGCUGGaGCUU--GUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 24966 0.68 0.474651
Target:  5'- ---cUUGCGcGCGGCCgCGAgggACAGGUCg -3'
miRNA:   3'- gucaAGCGC-CGCUGGaGCU---UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 41523 0.68 0.474651
Target:  5'- --cUUCGCGGCcgcGAUCgcgCGAGCAuGGCUg -3'
miRNA:   3'- gucAAGCGCCG---CUGGa--GCUUGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 26902 0.68 0.474651
Target:  5'- gCGGUcaUCGCGGCGACgUCGucCGGuugaCCg -3'
miRNA:   3'- -GUCA--AGCGCCGCUGgAGCuuGUCc---GG- -5'
28027 3' -56.4 NC_005887.1 + 38214 0.68 0.46454
Target:  5'- cCAG-UCGCGcGCaGCCUUGcGCGuGGCCg -3'
miRNA:   3'- -GUCaAGCGC-CGcUGGAGCuUGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 31117 0.68 0.463535
Target:  5'- ---cUCGCagagcagGGCGAgCUugcCGGGCAGGCCg -3'
miRNA:   3'- gucaAGCG-------CCGCUgGA---GCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 14718 0.68 0.454543
Target:  5'- -cGggCGCGGCGA--UCGcGCAGGCg -3'
miRNA:   3'- guCaaGCGCCGCUggAGCuUGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 13553 0.68 0.454543
Target:  5'- uCGGcgaugCGCuGCcGCC-CGAGCAGGCCg -3'
miRNA:   3'- -GUCaa---GCGcCGcUGGaGCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 13176 0.68 0.444664
Target:  5'- gCAGacaGCGG-GAgCggUCGAGCAGGCCg -3'
miRNA:   3'- -GUCaagCGCCgCUgG--AGCUUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 21250 0.69 0.434906
Target:  5'- -uGUUUGCGGCGACCgcgcCGAuaccguuCAaGCCa -3'
miRNA:   3'- guCAAGCGCCGCUGGa---GCUu------GUcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.