miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 13949 0.68 0.421719
Target:  5'- -cGCUCGGcuGCGACgugCGcGUGAcgaCAGCCg -3'
miRNA:   3'- caCGAGCU--CGCUGa--GC-CGCUa--GUCGG- -5'
28030 3' -57 NC_005887.1 + 6402 0.68 0.441044
Target:  5'- -gGCaCGAGCGACUgcGUGAUCAucGCCg -3'
miRNA:   3'- caCGaGCUCGCUGAgcCGCUAGU--CGG- -5'
28030 3' -57 NC_005887.1 + 36181 0.67 0.512338
Target:  5'- -cGUUCGGGuCGaggcGCUUGGCGAcaUCcGCCa -3'
miRNA:   3'- caCGAGCUC-GC----UGAGCCGCU--AGuCGG- -5'
28030 3' -57 NC_005887.1 + 6143 0.66 0.543262
Target:  5'- cGUGCUCGAcGcCGAaucguucCUCGGCacggugaucccGGUCGGCa -3'
miRNA:   3'- -CACGAGCU-C-GCU-------GAGCCG-----------CUAGUCGg -5'
28030 3' -57 NC_005887.1 + 1686 0.71 0.294383
Target:  5'- gGUGCagGAugguGCGGC-CGGUGAUCGGCg -3'
miRNA:   3'- -CACGagCU----CGCUGaGCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 27116 0.7 0.3498
Target:  5'- cUGCuUCGGGCcGCcguuguagUCGGCGAUCAucGCCu -3'
miRNA:   3'- cACG-AGCUCGcUG--------AGCCGCUAGU--CGG- -5'
28030 3' -57 NC_005887.1 + 12239 0.68 0.441044
Target:  5'- aUGCaCGGGCG-UUCGGCG--UAGCCg -3'
miRNA:   3'- cACGaGCUCGCuGAGCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 17455 0.66 0.54434
Target:  5'- cUGCUgcgaagaagacCGAGCG-CgCGGC-AUCGGCCg -3'
miRNA:   3'- cACGA-----------GCUCGCuGaGCCGcUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 41657 0.69 0.366939
Target:  5'- -cGUcggCGAGCagcaucGACUCGGCGAgCAGCa -3'
miRNA:   3'- caCGa--GCUCG------CUGAGCCGCUaGUCGg -5'
28030 3' -57 NC_005887.1 + 40053 0.66 0.566032
Target:  5'- -aGCcCGGGUaGAuCUCGGCGAgguGCCg -3'
miRNA:   3'- caCGaGCUCG-CU-GAGCCGCUaguCGG- -5'
28030 3' -57 NC_005887.1 + 26394 0.68 0.441044
Target:  5'- cUGCgacAGCGGCgugCGGCGcgUGGCCg -3'
miRNA:   3'- cACGagcUCGCUGa--GCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 6729 0.68 0.420766
Target:  5'- -aGCcCGAGCGACUUcaacccgGGCGAgaagCAGUg -3'
miRNA:   3'- caCGaGCUCGCUGAG-------CCGCUa---GUCGg -5'
28030 3' -57 NC_005887.1 + 41371 0.67 0.460861
Target:  5'- -gGCaauUUGcGCGugUCGGCGAUCA-CCu -3'
miRNA:   3'- caCG---AGCuCGCugAGCCGCUAGUcGG- -5'
28030 3' -57 NC_005887.1 + 7474 0.67 0.501841
Target:  5'- -aGCgCGAaCGACaaGGCGAUCgaGGCCg -3'
miRNA:   3'- caCGaGCUcGCUGagCCGCUAG--UCGG- -5'
28030 3' -57 NC_005887.1 + 1406 0.66 0.533594
Target:  5'- -cGgUCGAGCaugcGCUCGGCGuu--GCCg -3'
miRNA:   3'- caCgAGCUCGc---UGAGCCGCuaguCGG- -5'
28030 3' -57 NC_005887.1 + 19344 0.66 0.533594
Target:  5'- -cGcCUCGcagaAGCGAC-CGGCgucGAUCAGCg -3'
miRNA:   3'- caC-GAGC----UCGCUGaGCCG---CUAGUCGg -5'
28030 3' -57 NC_005887.1 + 33906 0.73 0.199071
Target:  5'- -cGCUCGAucGCGuugacgcggaucGCUCGGCGA-UAGCCu -3'
miRNA:   3'- caCGAGCU--CGC------------UGAGCCGCUaGUCGG- -5'
28030 3' -57 NC_005887.1 + 26881 0.71 0.287049
Target:  5'- -aGCUCGAacGCGuCUUGGUGcgCGGUCa -3'
miRNA:   3'- caCGAGCU--CGCuGAGCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 1586 0.7 0.312578
Target:  5'- -gGCUCG-GCGGCgcgcggcgcgccaaCGGCGAUC-GCCu -3'
miRNA:   3'- caCGAGCuCGCUGa-------------GCCGCUAGuCGG- -5'
28030 3' -57 NC_005887.1 + 11813 0.7 0.341446
Target:  5'- cUGCUgCGuGGCGuCUCGGCcGA-CGGCCg -3'
miRNA:   3'- cACGA-GC-UCGCuGAGCCG-CUaGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.