miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 11008 0.72 0.259151
Target:  5'- gGUGCUCGGGUG---CGGCGGUCuGGUCg -3'
miRNA:   3'- -CACGAGCUCGCugaGCCGCUAG-UCGG- -5'
28030 3' -57 NC_005887.1 + 11063 0.66 0.533594
Target:  5'- aUGCcggUCGAGCucGACgaGGCGAUCgacgcGGCCg -3'
miRNA:   3'- cACG---AGCUCG--CUGagCCGCUAG-----UCGG- -5'
28030 3' -57 NC_005887.1 + 11299 0.7 0.317258
Target:  5'- cUGCUCGcAGCGGC-CGGC--UCGGCa -3'
miRNA:   3'- cACGAGC-UCGCUGaGCCGcuAGUCGg -5'
28030 3' -57 NC_005887.1 + 11549 0.66 0.54434
Target:  5'- -aGCUCGGcGCGcaGCgcgCGGCGGUC-GCg -3'
miRNA:   3'- caCGAGCU-CGC--UGa--GCCGCUAGuCGg -5'
28030 3' -57 NC_005887.1 + 11813 0.7 0.341446
Target:  5'- cUGCUgCGuGGCGuCUCGGCcGA-CGGCCg -3'
miRNA:   3'- cACGA-GC-UCGCuGAGCCG-CUaGUCGG- -5'
28030 3' -57 NC_005887.1 + 11848 0.67 0.500797
Target:  5'- -aGCaCGGGCGgaucguuuucgacGCUCGGCGGUCuuucGUCg -3'
miRNA:   3'- caCGaGCUCGC-------------UGAGCCGCUAGu---CGG- -5'
28030 3' -57 NC_005887.1 + 12239 0.68 0.441044
Target:  5'- aUGCaCGGGCG-UUCGGCG--UAGCCg -3'
miRNA:   3'- cACGaGCUCGCuGAGCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 12653 0.73 0.199072
Target:  5'- -gGUUaCGAGUGGgUCGGCGAUUuGCCg -3'
miRNA:   3'- caCGA-GCUCGCUgAGCCGCUAGuCGG- -5'
28030 3' -57 NC_005887.1 + 12710 0.72 0.246051
Target:  5'- -cGCgcgUGAGUGACgaCGGCGAgaUCAGCUa -3'
miRNA:   3'- caCGa--GCUCGCUGa-GCCGCU--AGUCGG- -5'
28030 3' -57 NC_005887.1 + 12889 0.66 0.555155
Target:  5'- cGUGCgCGAGCugaucGGCaCGGCGAgccagCAcGCCg -3'
miRNA:   3'- -CACGaGCUCG-----CUGaGCCGCUa----GU-CGG- -5'
28030 3' -57 NC_005887.1 + 13613 0.69 0.358298
Target:  5'- cUGCUgGcagcGCGGCgcgCGGCGGccgcacUCAGCCg -3'
miRNA:   3'- cACGAgCu---CGCUGa--GCCGCU------AGUCGG- -5'
28030 3' -57 NC_005887.1 + 13949 0.68 0.421719
Target:  5'- -cGCUCGGcuGCGACgugCGcGUGAcgaCAGCCg -3'
miRNA:   3'- caCGAGCU--CGCUGa--GC-CGCUa--GUCGG- -5'
28030 3' -57 NC_005887.1 + 14375 0.68 0.41225
Target:  5'- cUGUUCGAGuCGccGCUCGGCGcgCGcGCg -3'
miRNA:   3'- cACGAGCUC-GC--UGAGCCGCuaGU-CGg -5'
28030 3' -57 NC_005887.1 + 14593 0.7 0.325175
Target:  5'- --cCUCGccGGCGcGCUCGGC-AUCGGCCa -3'
miRNA:   3'- cacGAGC--UCGC-UGAGCCGcUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 14697 0.68 0.435193
Target:  5'- -gGCUCGucGCGGCgggcgggccgggcgCGGCGAUCGcGCa -3'
miRNA:   3'- caCGAGCu-CGCUGa-------------GCCGCUAGU-CGg -5'
28030 3' -57 NC_005887.1 + 15429 0.66 0.522924
Target:  5'- -gGUUCGucgacggcggccAGCGACUCGG-GcgCAGCUu -3'
miRNA:   3'- caCGAGC------------UCGCUGAGCCgCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 15890 0.67 0.49144
Target:  5'- -aGCUCGGuGCG-CUCGaCGcgCAGCUg -3'
miRNA:   3'- caCGAGCU-CGCuGAGCcGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 16167 0.67 0.512338
Target:  5'- aGUGCgCGAGCGAUcgaGGCGAaCcugcgcgaagaGGCCg -3'
miRNA:   3'- -CACGaGCUCGCUGag-CCGCUaG-----------UCGG- -5'
28030 3' -57 NC_005887.1 + 17210 0.69 0.375723
Target:  5'- uGUGCUCGA-CGACcugcagcugCGGCGcuggaucUCGGCCg -3'
miRNA:   3'- -CACGAGCUcGCUGa--------GCCGCu------AGUCGG- -5'
28030 3' -57 NC_005887.1 + 17455 0.66 0.54434
Target:  5'- cUGCUgcgaagaagacCGAGCG-CgCGGC-AUCGGCCg -3'
miRNA:   3'- cACGA-----------GCUCGCuGaGCCGcUAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.