miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 17679 0.66 0.555155
Target:  5'- -cGCUUG-GCGACgUCGGCacGAUguucgugaCGGCCg -3'
miRNA:   3'- caCGAGCuCGCUG-AGCCG--CUA--------GUCGG- -5'
28030 3' -57 NC_005887.1 + 18355 0.68 0.421719
Target:  5'- -cGUUCGGGCGACUuccgcguagaCGGCGcgcCGGCg -3'
miRNA:   3'- caCGAGCUCGCUGA----------GCCGCua-GUCGg -5'
28030 3' -57 NC_005887.1 + 18565 0.69 0.393712
Target:  5'- -gGCUucgCGGGCGACaugcucgucgCGGCGuuccaGUCGGCCg -3'
miRNA:   3'- caCGA---GCUCGCUGa---------GCCGC-----UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 19344 0.66 0.533594
Target:  5'- -cGcCUCGcagaAGCGAC-CGGCgucGAUCAGCg -3'
miRNA:   3'- caC-GAGC----UCGCUGaGCCG---CUAGUCGg -5'
28030 3' -57 NC_005887.1 + 22773 0.67 0.49144
Target:  5'- cGUGCUCGuuGGCucGACgcCGGCG--CGGCCg -3'
miRNA:   3'- -CACGAGC--UCG--CUGa-GCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 22858 0.68 0.450893
Target:  5'- aUGCUCGc-CGGCaUCGG-GAUCAGCa -3'
miRNA:   3'- cACGAGCucGCUG-AGCCgCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 23237 0.71 0.279859
Target:  5'- -gGCacgCGAGCGg--CGGCGGUCGGCg -3'
miRNA:   3'- caCGa--GCUCGCugaGCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 23983 0.7 0.325175
Target:  5'- cUGCUCGAGCG-CgaggCGGCGcUCGGg- -3'
miRNA:   3'- cACGAGCUCGCuGa---GCCGCuAGUCgg -5'
28030 3' -57 NC_005887.1 + 24538 1.11 0.000364
Target:  5'- cGUGCUCGAGCGACUCGGCGAUCAGCCc -3'
miRNA:   3'- -CACGAGCUCGCUGAGCCGCUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 24839 0.69 0.358298
Target:  5'- -cGCuUCGuGCGGaagUCGGCGAUCAgGUCa -3'
miRNA:   3'- caCG-AGCuCGCUg--AGCCGCUAGU-CGG- -5'
28030 3' -57 NC_005887.1 + 25000 0.67 0.481139
Target:  5'- uUGC-CGAGCGucaGCUCGcGCcggCGGCCg -3'
miRNA:   3'- cACGaGCUCGC---UGAGC-CGcuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 25477 0.67 0.490405
Target:  5'- uUGCUUGggcacaacgcagcGGCGGCUCGGaCGAUggcgCGGCg -3'
miRNA:   3'- cACGAGC-------------UCGCUGAGCC-GCUA----GUCGg -5'
28030 3' -57 NC_005887.1 + 25836 0.68 0.450893
Target:  5'- -cGC-CG-GCGGCgacGCGAUCGGCCu -3'
miRNA:   3'- caCGaGCuCGCUGagcCGCUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 26394 0.68 0.441044
Target:  5'- cUGCgacAGCGGCgugCGGCGcgUGGCCg -3'
miRNA:   3'- cACGagcUCGCUGa--GCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 26695 0.71 0.301862
Target:  5'- -aGCUCGGcgcgcaucuGCGACacggcgcccugaUCGGCGAgccCGGCCg -3'
miRNA:   3'- caCGAGCU---------CGCUG------------AGCCGCUa--GUCGG- -5'
28030 3' -57 NC_005887.1 + 26760 0.68 0.431318
Target:  5'- cGUGCgcu-GCGucucaGCuUCGGCGAUCAGCg -3'
miRNA:   3'- -CACGagcuCGC-----UG-AGCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 26881 0.71 0.287049
Target:  5'- -aGCUCGAacGCGuCUUGGUGcgCGGUCa -3'
miRNA:   3'- caCGAGCU--CGCuGAGCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 27116 0.7 0.3498
Target:  5'- cUGCuUCGGGCcGCcguuguagUCGGCGAUCAucGCCu -3'
miRNA:   3'- cACG-AGCUCGcUG--------AGCCGCUAGU--CGG- -5'
28030 3' -57 NC_005887.1 + 27351 0.73 0.210029
Target:  5'- -aGCUCGGGCGGCacgccugCGGCcuGcgCGGCCu -3'
miRNA:   3'- caCGAGCUCGCUGa------GCCG--CuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 27988 0.68 0.421719
Target:  5'- -gGCUCGGGcCGAaUCGcGUcGUCGGCCg -3'
miRNA:   3'- caCGAGCUC-GCUgAGC-CGcUAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.