miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 14697 0.68 0.435193
Target:  5'- -gGCUCGucGCGGCgggcgggccgggcgCGGCGAUCGcGCa -3'
miRNA:   3'- caCGAGCu-CGCUGa-------------GCCGCUAGU-CGg -5'
28030 3' -57 NC_005887.1 + 26394 0.68 0.441044
Target:  5'- cUGCgacAGCGGCgugCGGCGcgUGGCCg -3'
miRNA:   3'- cACGagcUCGCUGa--GCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 12239 0.68 0.441044
Target:  5'- aUGCaCGGGCG-UUCGGCG--UAGCCg -3'
miRNA:   3'- cACGaGCUCGCuGAGCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 6402 0.68 0.441044
Target:  5'- -gGCaCGAGCGACUgcGUGAUCAucGCCg -3'
miRNA:   3'- caCGaGCUCGCUGAgcCGCUAGU--CGG- -5'
28030 3' -57 NC_005887.1 + 22858 0.68 0.450893
Target:  5'- aUGCUCGc-CGGCaUCGG-GAUCAGCa -3'
miRNA:   3'- cACGAGCucGCUG-AGCCgCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 25836 0.68 0.450893
Target:  5'- -cGC-CG-GCGGCgacGCGAUCGGCCu -3'
miRNA:   3'- caCGaGCuCGCUGagcCGCUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 41371 0.67 0.460861
Target:  5'- -gGCaauUUGcGCGugUCGGCGAUCA-CCu -3'
miRNA:   3'- caCG---AGCuCGCugAGCCGCUAGUcGG- -5'
28030 3' -57 NC_005887.1 + 5961 0.67 0.470945
Target:  5'- -aGCUCGcuGGCG-CgucCGGCGAUgCAGCa -3'
miRNA:   3'- caCGAGC--UCGCuGa--GCCGCUA-GUCGg -5'
28030 3' -57 NC_005887.1 + 25000 0.67 0.481139
Target:  5'- uUGC-CGAGCGucaGCUCGcGCcggCGGCCg -3'
miRNA:   3'- cACGaGCUCGC---UGAGC-CGcuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 25477 0.67 0.490405
Target:  5'- uUGCUUGggcacaacgcagcGGCGGCUCGGaCGAUggcgCGGCg -3'
miRNA:   3'- cACGAGC-------------UCGCUGAGCC-GCUA----GUCGg -5'
28030 3' -57 NC_005887.1 + 15890 0.67 0.49144
Target:  5'- -aGCUCGGuGCG-CUCGaCGcgCAGCUg -3'
miRNA:   3'- caCGAGCU-CGCuGAGCcGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 2197 0.67 0.49144
Target:  5'- -aGCUCacacGCGGCgagcgCGGCGcgCAGCg -3'
miRNA:   3'- caCGAGcu--CGCUGa----GCCGCuaGUCGg -5'
28030 3' -57 NC_005887.1 + 38112 0.67 0.49144
Target:  5'- cGUGCggcCGAGCG--UCGGCGcgagCAGCa -3'
miRNA:   3'- -CACGa--GCUCGCugAGCCGCua--GUCGg -5'
28030 3' -57 NC_005887.1 + 941 0.67 0.49144
Target:  5'- aGUGCccCGAGUGcUUCGGCGAaggcgugCAGCa -3'
miRNA:   3'- -CACGa-GCUCGCuGAGCCGCUa------GUCGg -5'
28030 3' -57 NC_005887.1 + 22773 0.67 0.49144
Target:  5'- cGUGCUCGuuGGCucGACgcCGGCG--CGGCCg -3'
miRNA:   3'- -CACGAGC--UCG--CUGa-GCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 11848 0.67 0.500797
Target:  5'- -aGCaCGGGCGgaucguuuucgacGCUCGGCGGUCuuucGUCg -3'
miRNA:   3'- caCGaGCUCGC-------------UGAGCCGCUAGu---CGG- -5'
28030 3' -57 NC_005887.1 + 7474 0.67 0.501841
Target:  5'- -aGCgCGAaCGACaaGGCGAUCgaGGCCg -3'
miRNA:   3'- caCGaGCUcGCUGagCCGCUAG--UCGG- -5'
28030 3' -57 NC_005887.1 + 37472 0.67 0.501841
Target:  5'- aGUGCgcCGGauGCGAUcagggCGGCGGUCAGUUc -3'
miRNA:   3'- -CACGa-GCU--CGCUGa----GCCGCUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 8050 0.67 0.501841
Target:  5'- cGUGCUCGAcGCGugUCuGCGugcgCAcGUCu -3'
miRNA:   3'- -CACGAGCU-CGCugAGcCGCua--GU-CGG- -5'
28030 3' -57 NC_005887.1 + 30372 0.67 0.501841
Target:  5'- -aGCUCG-GUGuaccGCUCGGCG-UC-GCCg -3'
miRNA:   3'- caCGAGCuCGC----UGAGCCGCuAGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.