miRNA display CGI


Results 41 - 60 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 25836 0.68 0.450893
Target:  5'- -cGC-CG-GCGGCgacGCGAUCGGCCu -3'
miRNA:   3'- caCGaGCuCGCUGagcCGCUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 6402 0.68 0.441044
Target:  5'- -gGCaCGAGCGACUgcGUGAUCAucGCCg -3'
miRNA:   3'- caCGaGCUCGCUGAgcCGCUAGU--CGG- -5'
28030 3' -57 NC_005887.1 + 26394 0.68 0.441044
Target:  5'- cUGCgacAGCGGCgugCGGCGcgUGGCCg -3'
miRNA:   3'- cACGagcUCGCUGa--GCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 12239 0.68 0.441044
Target:  5'- aUGCaCGGGCG-UUCGGCG--UAGCCg -3'
miRNA:   3'- cACGaGCUCGCuGAGCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 14697 0.68 0.435193
Target:  5'- -gGCUCGucGCGGCgggcgggccgggcgCGGCGAUCGcGCa -3'
miRNA:   3'- caCGAGCu-CGCUGa-------------GCCGCUAGU-CGg -5'
28030 3' -57 NC_005887.1 + 28797 0.68 0.431318
Target:  5'- cUGCUCGGGCGGCa--GCGcAUC-GCCg -3'
miRNA:   3'- cACGAGCUCGCUGagcCGC-UAGuCGG- -5'
28030 3' -57 NC_005887.1 + 26760 0.68 0.431318
Target:  5'- cGUGCgcu-GCGucucaGCuUCGGCGAUCAGCg -3'
miRNA:   3'- -CACGagcuCGC-----UG-AGCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 18355 0.68 0.421719
Target:  5'- -cGUUCGGGCGACUuccgcguagaCGGCGcgcCGGCg -3'
miRNA:   3'- caCGAGCUCGCUGA----------GCCGCua-GUCGg -5'
28030 3' -57 NC_005887.1 + 6915 0.68 0.421719
Target:  5'- -cGC-CGAGCGAaucccgcaaCUCGGC-AUgGGCCg -3'
miRNA:   3'- caCGaGCUCGCU---------GAGCCGcUAgUCGG- -5'
28030 3' -57 NC_005887.1 + 27988 0.68 0.421719
Target:  5'- -gGCUCGGGcCGAaUCGcGUcGUCGGCCg -3'
miRNA:   3'- caCGAGCUC-GCUgAGC-CGcUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 13949 0.68 0.421719
Target:  5'- -cGCUCGGcuGCGACgugCGcGUGAcgaCAGCCg -3'
miRNA:   3'- caCGAGCU--CGCUGa--GC-CGCUa--GUCGG- -5'
28030 3' -57 NC_005887.1 + 6729 0.68 0.420766
Target:  5'- -aGCcCGAGCGACUUcaacccgGGCGAgaagCAGUg -3'
miRNA:   3'- caCGaGCUCGCUGAG-------CCGCUa---GUCGg -5'
28030 3' -57 NC_005887.1 + 14375 0.68 0.41225
Target:  5'- cUGUUCGAGuCGccGCUCGGCGcgCGcGCg -3'
miRNA:   3'- cACGAGCUC-GC--UGAGCCGCuaGU-CGg -5'
28030 3' -57 NC_005887.1 + 18565 0.69 0.393712
Target:  5'- -gGCUucgCGGGCGACaugcucgucgCGGCGuuccaGUCGGCCg -3'
miRNA:   3'- caCGA---GCUCGCUGa---------GCCGC-----UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 1784 0.69 0.384648
Target:  5'- uUGCUCGAGCGcgccgagaACUCGugcGCGAgc-GCCa -3'
miRNA:   3'- cACGAGCUCGC--------UGAGC---CGCUaguCGG- -5'
28030 3' -57 NC_005887.1 + 17210 0.69 0.375723
Target:  5'- uGUGCUCGA-CGACcugcagcugCGGCGcuggaucUCGGCCg -3'
miRNA:   3'- -CACGAGCUcGCUGa--------GCCGCu------AGUCGG- -5'
28030 3' -57 NC_005887.1 + 41657 0.69 0.366939
Target:  5'- -cGUcggCGAGCagcaucGACUCGGCGAgCAGCa -3'
miRNA:   3'- caCGa--GCUCG------CUGAGCCGCUaGUCGg -5'
28030 3' -57 NC_005887.1 + 36129 0.69 0.366939
Target:  5'- -cGUcCGGcGUGGCUCGGUGAUCGucucGCCg -3'
miRNA:   3'- caCGaGCU-CGCUGAGCCGCUAGU----CGG- -5'
28030 3' -57 NC_005887.1 + 37205 0.69 0.358298
Target:  5'- -aGCUCG-GCGuagauCUCGaGCGucuuGUCAGCCc -3'
miRNA:   3'- caCGAGCuCGCu----GAGC-CGC----UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 24839 0.69 0.358298
Target:  5'- -cGCuUCGuGCGGaagUCGGCGAUCAgGUCa -3'
miRNA:   3'- caCG-AGCuCGCUg--AGCCGCUAGU-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.