miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 14375 0.68 0.41225
Target:  5'- cUGUUCGAGuCGccGCUCGGCGcgCGcGCg -3'
miRNA:   3'- cACGAGCUC-GC--UGAGCCGCuaGU-CGg -5'
28030 3' -57 NC_005887.1 + 18565 0.69 0.393712
Target:  5'- -gGCUucgCGGGCGACaugcucgucgCGGCGuuccaGUCGGCCg -3'
miRNA:   3'- caCGA---GCUCGCUGa---------GCCGC-----UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 36129 0.69 0.366939
Target:  5'- -cGUcCGGcGUGGCUCGGUGAUCGucucGCCg -3'
miRNA:   3'- caCGaGCU-CGCUGAGCCGCUAGU----CGG- -5'
28030 3' -57 NC_005887.1 + 37205 0.69 0.358298
Target:  5'- -aGCUCG-GCGuagauCUCGaGCGucuuGUCAGCCc -3'
miRNA:   3'- caCGAGCuCGCu----GAGC-CGC----UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 814 0.66 0.522924
Target:  5'- cGUGCgcgcCGAGCGcCUCGcG-GAUCuuGCCg -3'
miRNA:   3'- -CACGa---GCUCGCuGAGC-CgCUAGu-CGG- -5'
28030 3' -57 NC_005887.1 + 36181 0.67 0.512338
Target:  5'- -cGUUCGGGuCGaggcGCUUGGCGAcaUCcGCCa -3'
miRNA:   3'- caCGAGCUC-GC----UGAGCCGCU--AGuCGG- -5'
28030 3' -57 NC_005887.1 + 7474 0.67 0.501841
Target:  5'- -aGCgCGAaCGACaaGGCGAUCgaGGCCg -3'
miRNA:   3'- caCGaGCUcGCUGagCCGCUAG--UCGG- -5'
28030 3' -57 NC_005887.1 + 38112 0.67 0.49144
Target:  5'- cGUGCggcCGAGCG--UCGGCGcgagCAGCa -3'
miRNA:   3'- -CACGa--GCUCGCugAGCCGCua--GUCGg -5'
28030 3' -57 NC_005887.1 + 2197 0.67 0.49144
Target:  5'- -aGCUCacacGCGGCgagcgCGGCGcgCAGCg -3'
miRNA:   3'- caCGAGcu--CGCUGa----GCCGCuaGUCGg -5'
28030 3' -57 NC_005887.1 + 41371 0.67 0.460861
Target:  5'- -gGCaauUUGcGCGugUCGGCGAUCA-CCu -3'
miRNA:   3'- caCG---AGCuCGCugAGCCGCUAGUcGG- -5'
28030 3' -57 NC_005887.1 + 22858 0.68 0.450893
Target:  5'- aUGCUCGc-CGGCaUCGG-GAUCAGCa -3'
miRNA:   3'- cACGAGCucGCUG-AGCCgCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 15429 0.66 0.522924
Target:  5'- -gGUUCGucgacggcggccAGCGACUCGG-GcgCAGCUu -3'
miRNA:   3'- caCGAGC------------UCGCUGAGCCgCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 1406 0.66 0.533594
Target:  5'- -cGgUCGAGCaugcGCUCGGCGuu--GCCg -3'
miRNA:   3'- caCgAGCUCGc---UGAGCCGCuaguCGG- -5'
28030 3' -57 NC_005887.1 + 28707 0.66 0.533594
Target:  5'- cUGCacgUCGGuGCuGCUCGGCuGAgugCGGCCg -3'
miRNA:   3'- cACG---AGCU-CGcUGAGCCG-CUa--GUCGG- -5'
28030 3' -57 NC_005887.1 + 11063 0.66 0.533594
Target:  5'- aUGCcggUCGAGCucGACgaGGCGAUCgacgcGGCCg -3'
miRNA:   3'- cACG---AGCUCG--CUGagCCGCUAG-----UCGG- -5'
28030 3' -57 NC_005887.1 + 19344 0.66 0.533594
Target:  5'- -cGcCUCGcagaAGCGAC-CGGCgucGAUCAGCg -3'
miRNA:   3'- caC-GAGC----UCGCUGaGCCG---CUAGUCGg -5'
28030 3' -57 NC_005887.1 + 6143 0.66 0.543262
Target:  5'- cGUGCUCGAcGcCGAaucguucCUCGGCacggugaucccGGUCGGCa -3'
miRNA:   3'- -CACGAGCU-C-GCU-------GAGCCG-----------CUAGUCGg -5'
28030 3' -57 NC_005887.1 + 17455 0.66 0.54434
Target:  5'- cUGCUgcgaagaagacCGAGCG-CgCGGC-AUCGGCCg -3'
miRNA:   3'- cACGA-----------GCUCGCuGaGCCGcUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 40053 0.66 0.566032
Target:  5'- -aGCcCGGGUaGAuCUCGGCGAgguGCCg -3'
miRNA:   3'- caCGaGCUCG-CU-GAGCCGCUaguCGG- -5'
28030 3' -57 NC_005887.1 + 24538 1.11 0.000364
Target:  5'- cGUGCUCGAGCGACUCGGCGAUCAGCCc -3'
miRNA:   3'- -CACGAGCUCGCUGAGCCGCUAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.