Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28030 | 3' | -57 | NC_005887.1 | + | 30934 | 0.66 | 0.522924 |
Target: 5'- uGUGC-C-AGCGcGCUCGGCGGugaugUCGGCg -3' miRNA: 3'- -CACGaGcUCGC-UGAGCCGCU-----AGUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 30372 | 0.67 | 0.501841 |
Target: 5'- -aGCUCG-GUGuaccGCUCGGCG-UC-GCCg -3' miRNA: 3'- caCGAGCuCGC----UGAGCCGCuAGuCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 29758 | 0.66 | 0.566032 |
Target: 5'- -cGC-CGAGCGuCgCGGCcgGGUCGGCg -3' miRNA: 3'- caCGaGCUCGCuGaGCCG--CUAGUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 28797 | 0.68 | 0.431318 |
Target: 5'- cUGCUCGGGCGGCa--GCGcAUC-GCCg -3' miRNA: 3'- cACGAGCUCGCUGagcCGC-UAGuCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 28707 | 0.66 | 0.533594 |
Target: 5'- cUGCacgUCGGuGCuGCUCGGCuGAgugCGGCCg -3' miRNA: 3'- cACG---AGCU-CGcUGAGCCG-CUa--GUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 27988 | 0.68 | 0.421719 |
Target: 5'- -gGCUCGGGcCGAaUCGcGUcGUCGGCCg -3' miRNA: 3'- caCGAGCUC-GCUgAGC-CGcUAGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 27351 | 0.73 | 0.210029 |
Target: 5'- -aGCUCGGGCGGCacgccugCGGCcuGcgCGGCCu -3' miRNA: 3'- caCGAGCUCGCUGa------GCCG--CuaGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 27116 | 0.7 | 0.3498 |
Target: 5'- cUGCuUCGGGCcGCcguuguagUCGGCGAUCAucGCCu -3' miRNA: 3'- cACG-AGCUCGcUG--------AGCCGCUAGU--CGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 26881 | 0.71 | 0.287049 |
Target: 5'- -aGCUCGAacGCGuCUUGGUGcgCGGUCa -3' miRNA: 3'- caCGAGCU--CGCuGAGCCGCuaGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 26760 | 0.68 | 0.431318 |
Target: 5'- cGUGCgcu-GCGucucaGCuUCGGCGAUCAGCg -3' miRNA: 3'- -CACGagcuCGC-----UG-AGCCGCUAGUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 26695 | 0.71 | 0.301862 |
Target: 5'- -aGCUCGGcgcgcaucuGCGACacggcgcccugaUCGGCGAgccCGGCCg -3' miRNA: 3'- caCGAGCU---------CGCUG------------AGCCGCUa--GUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 26394 | 0.68 | 0.441044 |
Target: 5'- cUGCgacAGCGGCgugCGGCGcgUGGCCg -3' miRNA: 3'- cACGagcUCGCUGa--GCCGCuaGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 25836 | 0.68 | 0.450893 |
Target: 5'- -cGC-CG-GCGGCgacGCGAUCGGCCu -3' miRNA: 3'- caCGaGCuCGCUGagcCGCUAGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 25477 | 0.67 | 0.490405 |
Target: 5'- uUGCUUGggcacaacgcagcGGCGGCUCGGaCGAUggcgCGGCg -3' miRNA: 3'- cACGAGC-------------UCGCUGAGCC-GCUA----GUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 25000 | 0.67 | 0.481139 |
Target: 5'- uUGC-CGAGCGucaGCUCGcGCcggCGGCCg -3' miRNA: 3'- cACGaGCUCGC---UGAGC-CGcuaGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 24839 | 0.69 | 0.358298 |
Target: 5'- -cGCuUCGuGCGGaagUCGGCGAUCAgGUCa -3' miRNA: 3'- caCG-AGCuCGCUg--AGCCGCUAGU-CGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 24538 | 1.11 | 0.000364 |
Target: 5'- cGUGCUCGAGCGACUCGGCGAUCAGCCc -3' miRNA: 3'- -CACGAGCUCGCUGAGCCGCUAGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 23983 | 0.7 | 0.325175 |
Target: 5'- cUGCUCGAGCG-CgaggCGGCGcUCGGg- -3' miRNA: 3'- cACGAGCUCGCuGa---GCCGCuAGUCgg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 23237 | 0.71 | 0.279859 |
Target: 5'- -gGCacgCGAGCGg--CGGCGGUCGGCg -3' miRNA: 3'- caCGa--GCUCGCugaGCCGCUAGUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 22858 | 0.68 | 0.450893 |
Target: 5'- aUGCUCGc-CGGCaUCGG-GAUCAGCa -3' miRNA: 3'- cACGAGCucGCUG-AGCCgCUAGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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