miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 41923 0.66 0.54434
Target:  5'- cGUGCU-GAGCGGCUCGcaGCuGAgCuGCCc -3'
miRNA:   3'- -CACGAgCUCGCUGAGC--CG-CUaGuCGG- -5'
28030 3' -57 NC_005887.1 + 41657 0.69 0.366939
Target:  5'- -cGUcggCGAGCagcaucGACUCGGCGAgCAGCa -3'
miRNA:   3'- caCGa--GCUCG------CUGAGCCGCUaGUCGg -5'
28030 3' -57 NC_005887.1 + 41524 0.77 0.10483
Target:  5'- gGUGCUCGgcaagauccgcgaGGCG-CUCGGCGcgcacgcgaaGUCAGCCa -3'
miRNA:   3'- -CACGAGC-------------UCGCuGAGCCGC----------UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 41371 0.67 0.460861
Target:  5'- -gGCaauUUGcGCGugUCGGCGAUCA-CCu -3'
miRNA:   3'- caCG---AGCuCGCugAGCCGCUAGUcGG- -5'
28030 3' -57 NC_005887.1 + 41235 0.66 0.566032
Target:  5'- -aGCUCGAcaagcacacGCaccuGCUCGGCG-UCGGCa -3'
miRNA:   3'- caCGAGCU---------CGc---UGAGCCGCuAGUCGg -5'
28030 3' -57 NC_005887.1 + 40238 0.66 0.555155
Target:  5'- cGUGC-CGAGCGA--CGGCu-UCGGCa -3'
miRNA:   3'- -CACGaGCUCGCUgaGCCGcuAGUCGg -5'
28030 3' -57 NC_005887.1 + 40053 0.66 0.566032
Target:  5'- -aGCcCGGGUaGAuCUCGGCGAgguGCCg -3'
miRNA:   3'- caCGaGCUCG-CU-GAGCCGCUaguCGG- -5'
28030 3' -57 NC_005887.1 + 40019 0.66 0.533594
Target:  5'- gGUGCgcaucaUGGcGCGGCUCgaGGCGGcCGGCCu -3'
miRNA:   3'- -CACGa-----GCU-CGCUGAG--CCGCUaGUCGG- -5'
28030 3' -57 NC_005887.1 + 38112 0.67 0.49144
Target:  5'- cGUGCggcCGAGCG--UCGGCGcgagCAGCa -3'
miRNA:   3'- -CACGa--GCUCGCugAGCCGCua--GUCGg -5'
28030 3' -57 NC_005887.1 + 37472 0.67 0.501841
Target:  5'- aGUGCgcCGGauGCGAUcagggCGGCGGUCAGUUc -3'
miRNA:   3'- -CACGa-GCU--CGCUGa----GCCGCUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 37205 0.69 0.358298
Target:  5'- -aGCUCG-GCGuagauCUCGaGCGucuuGUCAGCCc -3'
miRNA:   3'- caCGAGCuCGCu----GAGC-CGC----UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 37099 0.71 0.301862
Target:  5'- -gGUgCGAGCGACaugUCGGUGAUCuGCa -3'
miRNA:   3'- caCGaGCUCGCUG---AGCCGCUAGuCGg -5'
28030 3' -57 NC_005887.1 + 37095 0.72 0.252531
Target:  5'- -aGCgggCGAGCacagcCUCGGCGAUCgcgcGGCCg -3'
miRNA:   3'- caCGa--GCUCGcu---GAGCCGCUAG----UCGG- -5'
28030 3' -57 NC_005887.1 + 36201 0.67 0.512338
Target:  5'- cGUGC-CGAGgaaCGAUUCGGCG-UCgAGCa -3'
miRNA:   3'- -CACGaGCUC---GCUGAGCCGCuAG-UCGg -5'
28030 3' -57 NC_005887.1 + 36181 0.67 0.512338
Target:  5'- -cGUUCGGGuCGaggcGCUUGGCGAcaUCcGCCa -3'
miRNA:   3'- caCGAGCUC-GC----UGAGCCGCU--AGuCGG- -5'
28030 3' -57 NC_005887.1 + 36129 0.69 0.366939
Target:  5'- -cGUcCGGcGUGGCUCGGUGAUCGucucGCCg -3'
miRNA:   3'- caCGaGCU-CGCUGAGCCGCUAGU----CGG- -5'
28030 3' -57 NC_005887.1 + 34026 0.72 0.252531
Target:  5'- cGUGCggcuuguacauuUCGAGCGcACucguccaaUCGGCGuguGUCAGCCg -3'
miRNA:   3'- -CACG------------AGCUCGC-UG--------AGCCGC---UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 33906 0.73 0.199071
Target:  5'- -cGCUCGAucGCGuugacgcggaucGCUCGGCGA-UAGCCu -3'
miRNA:   3'- caCGAGCU--CGC------------UGAGCCGCUaGUCGG- -5'
28030 3' -57 NC_005887.1 + 32782 0.67 0.501841
Target:  5'- -gGCUCGuGCGcaggaUCGGCGcgC-GCCg -3'
miRNA:   3'- caCGAGCuCGCug---AGCCGCuaGuCGG- -5'
28030 3' -57 NC_005887.1 + 32171 0.66 0.566032
Target:  5'- cUGCaggUCG-GCG-CUCaGCGAUgAGCCa -3'
miRNA:   3'- cACG---AGCuCGCuGAGcCGCUAgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.