Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28031 | 5' | -60 | NC_005887.1 | + | 41192 | 0.69 | 0.249498 |
Target: 5'- cGCCuGGCugcauccGA-CCCGCGCGUCGUcGUGCc -3' miRNA: 3'- -CGG-CCG-------CUcGGGCGCGUAGUA-CACGc -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 34256 | 0.69 | 0.243829 |
Target: 5'- aGCgCGGCGAGCUgCGCGCGcgcuuUCGUgaacgaccagacGUGCGc -3' miRNA: 3'- -CG-GCCGCUCGG-GCGCGU-----AGUA------------CACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 1701 | 0.7 | 0.231614 |
Target: 5'- gGCCGGUGAucgGCgCGCGCucGUCA-GUGCc -3' miRNA: 3'- -CGGCCGCU---CGgGCGCG--UAGUaCACGc -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 26418 | 0.7 | 0.225702 |
Target: 5'- gGCCGGCGcaucgauuccGGCCCGCGCGgaacgCAgGU-CGg -3' miRNA: 3'- -CGGCCGC----------UCGGGCGCGUa----GUaCAcGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 36869 | 0.7 | 0.225702 |
Target: 5'- gGCCGGUGcugcgccaucGGCCUGCGuCGUgGUGgaUGCGg -3' miRNA: 3'- -CGGCCGC----------UCGGGCGC-GUAgUAC--ACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 4792 | 0.7 | 0.225702 |
Target: 5'- aGCCGGCGAGgCCGUGC-UCGcGgaucucGCGc -3' miRNA: 3'- -CGGCCGCUCgGGCGCGuAGUaCa-----CGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 26686 | 0.7 | 0.219918 |
Target: 5'- aGCUGGuCGAGCUCgGCGCG-CAUcUGCGa -3' miRNA: 3'- -CGGCC-GCUCGGG-CGCGUaGUAcACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 26082 | 0.71 | 0.203323 |
Target: 5'- cGUCaGCG-GCCCGCGCGgcguuUCAUG-GCGu -3' miRNA: 3'- -CGGcCGCuCGGGCGCGU-----AGUACaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 37848 | 0.71 | 0.198037 |
Target: 5'- aGUCGGCGAGCagaCGCGCG--AUGcGCGc -3' miRNA: 3'- -CGGCCGCUCGg--GCGCGUagUACaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 26727 | 0.71 | 0.192872 |
Target: 5'- aUCGGCGAGCCCG-GCcgCcUGcUGCGc -3' miRNA: 3'- cGGCCGCUCGGGCgCGuaGuAC-ACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 37445 | 0.71 | 0.182895 |
Target: 5'- aGCgCGGCGcuuGCCUGCGCGguuugCA-GUGCGc -3' miRNA: 3'- -CG-GCCGCu--CGGGCGCGUa----GUaCACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 15874 | 0.71 | 0.178079 |
Target: 5'- gGCCGGCauGCCCGUGC-UCGUG-GCc -3' miRNA: 3'- -CGGCCGcuCGGGCGCGuAGUACaCGc -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 41617 | 0.72 | 0.155658 |
Target: 5'- gGCCGGCGcGGCCCGUgaggaucugcuGCGUC-UGcGCGg -3' miRNA: 3'- -CGGCCGC-UCGGGCG-----------CGUAGuACaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 41950 | 0.74 | 0.125064 |
Target: 5'- cCCGGCGuGCUCGCGUGgugCGUGcGCGg -3' miRNA: 3'- cGGCCGCuCGGGCGCGUa--GUACaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 24214 | 0.74 | 0.108874 |
Target: 5'- cGUCGGCG-GCCCGCGCuucgCcgGUuGCGu -3' miRNA: 3'- -CGGCCGCuCGGGCGCGua--GuaCA-CGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 36996 | 0.75 | 0.10588 |
Target: 5'- cGCCGGCGAGCaCGCGCAggcCGUacGCGa -3' miRNA: 3'- -CGGCCGCUCGgGCGCGUa--GUAcaCGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 34350 | 0.75 | 0.099845 |
Target: 5'- cGCCGGCcacggcuggagacGAGCgccCCGCGUAUCAgaGUGCGg -3' miRNA: 3'- -CGGCCG-------------CUCG---GGCGCGUAGUa-CACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 22582 | 0.75 | 0.097358 |
Target: 5'- uGCUGGuCGGGCUCGCa-AUCGUGUGCGu -3' miRNA: 3'- -CGGCC-GCUCGGGCGcgUAGUACACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 26988 | 0.78 | 0.056778 |
Target: 5'- uGCCGGUGAGguucacccaUCCGUGCAccuUCGUGUGCGc -3' miRNA: 3'- -CGGCCGCUC---------GGGCGCGU---AGUACACGC- -5' |
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28031 | 5' | -60 | NC_005887.1 | + | 24391 | 1.1 | 0.000202 |
Target: 5'- uGCCGGCGAGCCCGCGCAUCAUGUGCGa -3' miRNA: 3'- -CGGCCGCUCGGGCGCGUAGUACACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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