miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 21039 0.69 0.156688
Target:  5'- gUCGGCGCG--GUgGGCGuGCCCGUGa- -3'
miRNA:   3'- -AGCCGUGCugCAgCCGC-CGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 12077 0.69 0.15546
Target:  5'- gUCGGCACGuCGcUCGGUcaGGUcaccgacgugcuggCCGCGCa -3'
miRNA:   3'- -AGCCGUGCuGC-AGCCG--CCG--------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 21215 0.69 0.152629
Target:  5'- aUUGGCACuagcauucguGGCGUUGGCGaGCaCCGUGUUu -3'
miRNA:   3'- -AGCCGUG----------CUGCAGCCGC-CG-GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 12080 0.69 0.152629
Target:  5'- gCGGCACGAuCGUcgcgcCGGaCGGCaaGCGCc -3'
miRNA:   3'- aGCCGUGCU-GCA-----GCC-GCCGggCGCGa -5'
28032 5' -64.1 NC_005887.1 + 33252 0.69 0.148666
Target:  5'- -aGuaACGGCGcCGGU-GCCCGCGCUg -3'
miRNA:   3'- agCcgUGCUGCaGCCGcCGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 37304 0.7 0.146333
Target:  5'- cCGGCGCGGCcauugccgugccuucGUUGGCuucGGUCUGCGCc -3'
miRNA:   3'- aGCCGUGCUG---------------CAGCCG---CCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 40537 0.7 0.144797
Target:  5'- gCGGCAgCGACGaCGGUcugGcGCUCGCGCa -3'
miRNA:   3'- aGCCGU-GCUGCaGCCG---C-CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17690 0.7 0.144797
Target:  5'- gUCGGCACGAUGuUCGuGaCGGCCgGCu-- -3'
miRNA:   3'- -AGCCGUGCUGC-AGC-C-GCCGGgCGcga -5'
28032 5' -64.1 NC_005887.1 + 29486 0.7 0.14102
Target:  5'- aCaGCACGAUGUcguagcCGGCGGCCUcgacggcggGCGCg -3'
miRNA:   3'- aGcCGUGCUGCA------GCCGCCGGG---------CGCGa -5'
28032 5' -64.1 NC_005887.1 + 17333 0.7 0.14102
Target:  5'- cCGGCugGcCGgCGGCcGCCgGCGCg -3'
miRNA:   3'- aGCCGugCuGCaGCCGcCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 30476 0.7 0.14102
Target:  5'- gCGGUGCG-CGaC-GCGGCCCGUGCg -3'
miRNA:   3'- aGCCGUGCuGCaGcCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 10072 0.7 0.139905
Target:  5'- cCaGCAgGAgccgcauuccgucgUGUgGGCGGCCCGCGCc -3'
miRNA:   3'- aGcCGUgCU--------------GCAgCCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 5827 0.7 0.137333
Target:  5'- gUCGGCGCGG-GUCGcgaagggcgaaGCGGagcucaCCGCGCUg -3'
miRNA:   3'- -AGCCGUGCUgCAGC-----------CGCCg-----GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 5133 0.7 0.13697
Target:  5'- cUCGGCAugaccgcgcugccCGACGUCGGCGcGCCgcUGaUGCUg -3'
miRNA:   3'- -AGCCGU-------------GCUGCAGCCGC-CGG--GC-GCGA- -5'
28032 5' -64.1 NC_005887.1 + 26631 0.7 0.133736
Target:  5'- cUGGCGCGucagcuccuucACGcCGGCGGCggaaucauccggCCGCGCg -3'
miRNA:   3'- aGCCGUGC-----------UGCaGCCGCCG------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 9600 0.7 0.133736
Target:  5'- aUGGCGCG-CGcCGGCGcGCacgcgagcgCCGCGCUa -3'
miRNA:   3'- aGCCGUGCuGCaGCCGC-CG---------GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 4620 0.7 0.123457
Target:  5'- cUCGcCGCGGCGcCGGUGGCCgccgGCGCg -3'
miRNA:   3'- -AGCcGUGCUGCaGCCGCCGGg---CGCGa -5'
28032 5' -64.1 NC_005887.1 + 1486 0.71 0.117017
Target:  5'- aCGGCguGCGGCGcUCGcGCGGCgcggCCGUGCg -3'
miRNA:   3'- aGCCG--UGCUGC-AGC-CGCCG----GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 585 0.71 0.116704
Target:  5'- gUCGGCACGACcUCGaucGUGgucuucgaccagaGCCCGCGCg -3'
miRNA:   3'- -AGCCGUGCUGcAGC---CGC-------------CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 21267 0.71 0.113916
Target:  5'- -gGGCACcGCGgCGGCGGCguaUGCGCUg -3'
miRNA:   3'- agCCGUGcUGCaGCCGCCGg--GCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.