miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 14642 0.68 0.183145
Target:  5'- aCGGCAgcCGGCG-CGGUGcuGCCCGuCGCc -3'
miRNA:   3'- aGCCGU--GCUGCaGCCGC--CGGGC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 3856 0.68 0.178476
Target:  5'- gUCGGCAcCGACGauguguacggCGGCaGCCCG-GCa -3'
miRNA:   3'- -AGCCGU-GCUGCa---------GCCGcCGGGCgCGa -5'
28032 5' -64.1 NC_005887.1 + 11551 0.68 0.178476
Target:  5'- cUCGGCGCGcaGCGcgCGGCGG-UCGCGg- -3'
miRNA:   3'- -AGCCGUGC--UGCa-GCCGCCgGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 39439 0.68 0.178476
Target:  5'- cUUGGCgGCGGCGUcguucgCGGCGGCCgaCGUGUc -3'
miRNA:   3'- -AGCCG-UGCUGCA------GCCGCCGG--GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 25367 0.68 0.177096
Target:  5'- aUCGGCACGuagccguaGUCGagcucgccgacauuGCcGCCCGCGCg -3'
miRNA:   3'- -AGCCGUGCug------CAGC--------------CGcCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 26206 0.68 0.173913
Target:  5'- cUCGGCGCgccgGugGUUGGCGGggugguUgCGCGCg -3'
miRNA:   3'- -AGCCGUG----CugCAGCCGCC------GgGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 20860 0.68 0.173913
Target:  5'- gCGGUaACGGUGUUGGCGGCCUgaaugauagugGCGCc -3'
miRNA:   3'- aGCCG-UGCUGCAGCCGCCGGG-----------CGCGa -5'
28032 5' -64.1 NC_005887.1 + 27406 0.68 0.173913
Target:  5'- gCGGCGCGuCGUaCGGCaGCgCGCGg- -3'
miRNA:   3'- aGCCGUGCuGCA-GCCGcCGgGCGCga -5'
28032 5' -64.1 NC_005887.1 + 36923 0.69 0.169455
Target:  5'- -gGGCGCGugGUCGcgccggucgcuGCGGCgCCGCccGCc -3'
miRNA:   3'- agCCGUGCugCAGC-----------CGCCG-GGCG--CGa -5'
28032 5' -64.1 NC_005887.1 + 37578 0.69 0.169455
Target:  5'- cCGGCugG-CGUCaGCuuCCCGCGCUc -3'
miRNA:   3'- aGCCGugCuGCAGcCGccGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 40753 0.69 0.169455
Target:  5'- -aGGCGauCGcCGUUGGCGcGCCgCGCGCc -3'
miRNA:   3'- agCCGU--GCuGCAGCCGC-CGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 35830 0.69 0.169455
Target:  5'- cUCGuGCGCcGCGUCGGCGuagaucaucGCCUGCGg- -3'
miRNA:   3'- -AGC-CGUGcUGCAGCCGC---------CGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 17397 0.69 0.164669
Target:  5'- aCGcGCugGucgaucACGUCGGCGGCauggcgaagaacaUCGCGCUc -3'
miRNA:   3'- aGC-CGugC------UGCAGCCGCCG-------------GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 39269 0.69 0.160844
Target:  5'- gCGGC-CGugGUCGGCGuucagcGCCUGCa-- -3'
miRNA:   3'- aGCCGuGCugCAGCCGC------CGGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 1435 0.69 0.160844
Target:  5'- cUCGGUGCGcGCGcgguagcccuUCGGCGGCUCGuCGUc -3'
miRNA:   3'- -AGCCGUGC-UGC----------AGCCGCCGGGC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 15549 0.69 0.160844
Target:  5'- -gGGCgACGAC-UCGGCGcGCgcgaCCGCGCUc -3'
miRNA:   3'- agCCG-UGCUGcAGCCGC-CG----GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 9786 0.69 0.160844
Target:  5'- aUCGGCAUGACGggcgaugagUgGGUgauugGGCCCGCGa- -3'
miRNA:   3'- -AGCCGUGCUGC---------AgCCG-----CCGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 28004 0.69 0.157924
Target:  5'- cCGGCACGcugcuucacgaucGCcgcguucaccugcuuGUCGGCgucGGCCUGCGCUu -3'
miRNA:   3'- aGCCGUGC-------------UG---------------CAGCCG---CCGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 25510 0.69 0.156688
Target:  5'- aUGGCGCGGCGggUGGCGGCauaauCGuCGCc -3'
miRNA:   3'- aGCCGUGCUGCa-GCCGCCGg----GC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 40029 0.69 0.156688
Target:  5'- aUGGCGCGGCucgaGGCGGCCgGC-CUa -3'
miRNA:   3'- aGCCGUGCUGcag-CCGCCGGgCGcGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.