miRNA display CGI


Results 41 - 60 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 860 0.67 0.218931
Target:  5'- -aGGUGCccGugGaCGcGUGGCCCGCGCc -3'
miRNA:   3'- agCCGUG--CugCaGC-CGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 26697 0.67 0.217282
Target:  5'- cUCGGCGCGcaucuGCGacacggcgcccugaUCGGCGaGCCCGgcCGCc -3'
miRNA:   3'- -AGCCGUGC-----UGC--------------AGCCGC-CGGGC--GCGa -5'
28032 5' -64.1 NC_005887.1 + 41658 0.67 0.2151
Target:  5'- gUCGGCGagcagcaucgacuCGGCGagcagcagcaccuggUCGGCGGUCaUGCGCg -3'
miRNA:   3'- -AGCCGU-------------GCUGC---------------AGCCGCCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 29097 0.67 0.213475
Target:  5'- aUCGGCaACGAauCGaCGGCGGUCaGCGUc -3'
miRNA:   3'- -AGCCG-UGCU--GCaGCCGCCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 9025 0.67 0.213475
Target:  5'- cUCuGCAgcccgUGACGuuugUCGGCGGCCCGUucGCg -3'
miRNA:   3'- -AGcCGU-----GCUGC----AGCCGCCGGGCG--CGa -5'
28032 5' -64.1 NC_005887.1 + 12599 0.67 0.212936
Target:  5'- cCGGcCGCGACGcUCGGCGugcugacgcagaaGCCCGaccaGCc -3'
miRNA:   3'- aGCC-GUGCUGC-AGCCGC-------------CGGGCg---CGa -5'
28032 5' -64.1 NC_005887.1 + 36299 0.67 0.207609
Target:  5'- cCGGUugGccgaucuGCG-CGGCGGUcgacgCCGCGCa -3'
miRNA:   3'- aGCCGugC-------UGCaGCCGCCG-----GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 34242 0.68 0.202913
Target:  5'- gCGGCGCcucGGCGagcgCGGCGaGCUgCGCGCg -3'
miRNA:   3'- aGCCGUG---CUGCa---GCCGC-CGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 23081 0.68 0.202913
Target:  5'- cUCGGUuucuuGCGUCGGCGGCaCCaaGCg -3'
miRNA:   3'- -AGCCGugc--UGCAGCCGCCG-GGcgCGa -5'
28032 5' -64.1 NC_005887.1 + 37766 0.68 0.202913
Target:  5'- aUCuGCGCGGCcugcgccUCGGCGGCuuGCuGCg -3'
miRNA:   3'- -AGcCGUGCUGc------AGCCGCCGggCG-CGa -5'
28032 5' -64.1 NC_005887.1 + 14600 0.68 0.197803
Target:  5'- gUCGGUACG-CGUaCGGCcGUCgGCGCc -3'
miRNA:   3'- -AGCCGUGCuGCA-GCCGcCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 13864 0.68 0.197299
Target:  5'- cCGGCGCGcgucuacuuCGUCGagcugaaGCGGCCCG-GCa -3'
miRNA:   3'- aGCCGUGCu--------GCAGC-------CGCCGGGCgCGa -5'
28032 5' -64.1 NC_005887.1 + 30152 0.68 0.194792
Target:  5'- gUCGGCGcCGAUGcCGGCGucgaagucgcggaacGCCUGCaGCUu -3'
miRNA:   3'- -AGCCGU-GCUGCaGCCGC---------------CGGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 41944 0.68 0.192807
Target:  5'- gCGGCGCGGCGcgucuucgCGGCGcuuGCCCGUcuuuucGCa -3'
miRNA:   3'- aGCCGUGCUGCa-------GCCGC---CGGGCG------CGa -5'
28032 5' -64.1 NC_005887.1 + 32503 0.68 0.192807
Target:  5'- gCGGCgcGCGGCGUUcaGGuuGgCCGCGCUg -3'
miRNA:   3'- aGCCG--UGCUGCAG--CCgcCgGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 32290 0.68 0.192807
Target:  5'- aCGGgGCGAuCGUCGGgcCaGCCgGCGCg -3'
miRNA:   3'- aGCCgUGCU-GCAGCC--GcCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 21797 0.68 0.192807
Target:  5'- cCGGCaucaacACGACGUCcGCGGCgcugCCGgGCg -3'
miRNA:   3'- aGCCG------UGCUGCAGcCGCCG----GGCgCGa -5'
28032 5' -64.1 NC_005887.1 + 6858 0.68 0.192807
Target:  5'- gUCGGaccuCGCGACGUCGGCcaa-CGCGCa -3'
miRNA:   3'- -AGCC----GUGCUGCAGCCGccggGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 32425 0.68 0.192313
Target:  5'- cCGGCgGCGAUGUggcCGGCGGCgaucaggUUGCGCa -3'
miRNA:   3'- aGCCG-UGCUGCA---GCCGCCG-------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 6477 0.68 0.187921
Target:  5'- -gGGCGCGGCGUcgCGGUGucuGCCgaGCGCa -3'
miRNA:   3'- agCCGUGCUGCA--GCCGC---CGGg-CGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.