miRNA display CGI


Results 41 - 60 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 14530 0.78 0.036167
Target:  5'- -aGGCGCGGcCGUCGGCGGCgcgucgaucggcaugUCGCGCg -3'
miRNA:   3'- agCCGUGCU-GCAGCCGCCG---------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 23235 0.78 0.032874
Target:  5'- aCGGCACGcgaGCGgCGGCGGUCgGCGCg -3'
miRNA:   3'- aGCCGUGC---UGCaGCCGCCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17275 0.79 0.026995
Target:  5'- -gGGCGaGACGUCGGgCGGCgCCGCGCg -3'
miRNA:   3'- agCCGUgCUGCAGCC-GCCG-GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 13397 0.8 0.024805
Target:  5'- cCGGCGCggcgGACGUCGGCGGCaagCCGCuGCUg -3'
miRNA:   3'- aGCCGUG----CUGCAGCCGCCG---GGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 41590 0.8 0.021538
Target:  5'- gUCGGCcaGCGGCGgcccaggugCGGCGGCCgGCGCg -3'
miRNA:   3'- -AGCCG--UGCUGCa--------GCCGCCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 3493 0.71 0.112092
Target:  5'- aUCGaGCACGACGUCGGCaagGGCaucgucuaccgcaaCGUGCc -3'
miRNA:   3'- -AGC-CGUGCUGCAGCCG---CCGg-------------GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 21267 0.71 0.113916
Target:  5'- -gGGCACcGCGgCGGCGGCguaUGCGCUg -3'
miRNA:   3'- agCCGUGcUGCaGCCGCCGg--GCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 15549 0.69 0.160844
Target:  5'- -gGGCgACGAC-UCGGCGcGCgcgaCCGCGCUc -3'
miRNA:   3'- agCCG-UGCUGcAGCCGC-CG----GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 40029 0.69 0.156688
Target:  5'- aUGGCGCGGCucgaGGCGGCCgGC-CUa -3'
miRNA:   3'- aGCCGUGCUGcag-CCGCCGGgCGcGA- -5'
28032 5' -64.1 NC_005887.1 + 25510 0.69 0.156688
Target:  5'- aUGGCGCGGCGggUGGCGGCauaauCGuCGCc -3'
miRNA:   3'- aGCCGUGCUGCa-GCCGCCGg----GC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 12077 0.69 0.15546
Target:  5'- gUCGGCACGuCGcUCGGUcaGGUcaccgacgugcuggCCGCGCa -3'
miRNA:   3'- -AGCCGUGCuGC-AGCCG--CCG--------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17690 0.7 0.144797
Target:  5'- gUCGGCACGAUGuUCGuGaCGGCCgGCu-- -3'
miRNA:   3'- -AGCCGUGCUGC-AGC-C-GCCGGgCGcga -5'
28032 5' -64.1 NC_005887.1 + 40537 0.7 0.144797
Target:  5'- gCGGCAgCGACGaCGGUcugGcGCUCGCGCa -3'
miRNA:   3'- aGCCGU-GCUGCaGCCG---C-CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 29486 0.7 0.14102
Target:  5'- aCaGCACGAUGUcguagcCGGCGGCCUcgacggcggGCGCg -3'
miRNA:   3'- aGcCGUGCUGCA------GCCGCCGGG---------CGCGa -5'
28032 5' -64.1 NC_005887.1 + 30476 0.7 0.14102
Target:  5'- gCGGUGCG-CGaC-GCGGCCCGUGCg -3'
miRNA:   3'- aGCCGUGCuGCaGcCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 10072 0.7 0.139905
Target:  5'- cCaGCAgGAgccgcauuccgucgUGUgGGCGGCCCGCGCc -3'
miRNA:   3'- aGcCGUgCU--------------GCAgCCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 5827 0.7 0.137333
Target:  5'- gUCGGCGCGG-GUCGcgaagggcgaaGCGGagcucaCCGCGCUg -3'
miRNA:   3'- -AGCCGUGCUgCAGC-----------CGCCg-----GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 5133 0.7 0.13697
Target:  5'- cUCGGCAugaccgcgcugccCGACGUCGGCGcGCCgcUGaUGCUg -3'
miRNA:   3'- -AGCCGU-------------GCUGCAGCCGC-CGG--GC-GCGA- -5'
28032 5' -64.1 NC_005887.1 + 4620 0.7 0.123457
Target:  5'- cUCGcCGCGGCGcCGGUGGCCgccgGCGCg -3'
miRNA:   3'- -AGCcGUGCUGCaGCCGCCGGg---CGCGa -5'
28032 5' -64.1 NC_005887.1 + 1486 0.71 0.117017
Target:  5'- aCGGCguGCGGCGcUCGcGCGGCgcggCCGUGCg -3'
miRNA:   3'- aGCCG--UGCUGC-AGC-CGCCG----GGCGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.