miRNA display CGI


Results 41 - 60 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 15439 0.67 0.229626
Target:  5'- uUCGGUcaaccggACGACGUCGccGCGaugaCCGCGCa -3'
miRNA:   3'- -AGCCG-------UGCUGCAGC--CGCcg--GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 15549 0.69 0.160844
Target:  5'- -gGGCgACGAC-UCGGCGcGCgcgaCCGCGCUc -3'
miRNA:   3'- agCCG-UGCUGcAGCCGC-CG----GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 15845 0.72 0.094272
Target:  5'- gCGGCGCGAuCGagGGaaacGCCCGCGCg -3'
miRNA:   3'- aGCCGUGCU-GCagCCgc--CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17275 0.79 0.026995
Target:  5'- -gGGCGaGACGUCGGgCGGCgCCGCGCg -3'
miRNA:   3'- agCCGUgCUGCAGCC-GCCG-GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17333 0.7 0.14102
Target:  5'- cCGGCugGcCGgCGGCcGCCgGCGCg -3'
miRNA:   3'- aGCCGugCuGCaGCCGcCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17394 0.77 0.037826
Target:  5'- gCGGcCGCG-CGcaaGGCGGCCCGCGCg -3'
miRNA:   3'- aGCC-GUGCuGCag-CCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17397 0.69 0.164669
Target:  5'- aCGcGCugGucgaucACGUCGGCGGCauggcgaagaacaUCGCGCUc -3'
miRNA:   3'- aGC-CGugC------UGCAGCCGCCG-------------GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 17538 0.76 0.043508
Target:  5'- gCGGCAUGACGUCGGuCGGCgCGUaCUg -3'
miRNA:   3'- aGCCGUGCUGCAGCC-GCCGgGCGcGA- -5'
28032 5' -64.1 NC_005887.1 + 17690 0.7 0.144797
Target:  5'- gUCGGCACGAUGuUCGuGaCGGCCgGCu-- -3'
miRNA:   3'- -AGCCGUGCUGC-AGC-C-GCCGGgCGcga -5'
28032 5' -64.1 NC_005887.1 + 17744 0.66 0.24802
Target:  5'- cUCGGCACGGC--CGcGCGGCUgaugGCGCc -3'
miRNA:   3'- -AGCCGUGCUGcaGC-CGCCGGg---CGCGa -5'
28032 5' -64.1 NC_005887.1 + 18340 0.67 0.236018
Target:  5'- aUCGGCgacauGCGACGUUcgGGCGacuUCCGCGUa -3'
miRNA:   3'- -AGCCG-----UGCUGCAG--CCGCc--GGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 18622 0.82 0.016228
Target:  5'- cUCGGCAgcGCGaUCGGCGGCCCGCuGCUg -3'
miRNA:   3'- -AGCCGUgcUGC-AGCCGCCGGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 18937 0.66 0.254208
Target:  5'- cUCGcaGCGGcCGUCGGCGGCCaauaCGCa -3'
miRNA:   3'- -AGCcgUGCU-GCAGCCGCCGGgc--GCGa -5'
28032 5' -64.1 NC_005887.1 + 20860 0.68 0.173913
Target:  5'- gCGGUaACGGUGUUGGCGGCCUgaaugauagugGCGCc -3'
miRNA:   3'- aGCCG-UGCUGCAGCCGCCGGG-----------CGCGa -5'
28032 5' -64.1 NC_005887.1 + 21039 0.69 0.156688
Target:  5'- gUCGGCGCG--GUgGGCGuGCCCGUGa- -3'
miRNA:   3'- -AGCCGUGCugCAgCCGC-CGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 21215 0.69 0.152629
Target:  5'- aUUGGCACuagcauucguGGCGUUGGCGaGCaCCGUGUUu -3'
miRNA:   3'- -AGCCGUG----------CUGCAGCCGC-CG-GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 21267 0.71 0.113916
Target:  5'- -gGGCACcGCGgCGGCGGCguaUGCGCUg -3'
miRNA:   3'- agCCGUGcUGCaGCCGCCGg--GCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 21797 0.68 0.192807
Target:  5'- cCGGCaucaacACGACGUCcGCGGCgcugCCGgGCg -3'
miRNA:   3'- aGCCG------UGCUGCAGcCGCCG----GGCgCGa -5'
28032 5' -64.1 NC_005887.1 + 22202 0.76 0.050021
Target:  5'- cCGGCGCGGCGgucgcauauuaCGGUGGCCCGCu-- -3'
miRNA:   3'- aGCCGUGCUGCa----------GCCGCCGGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 22780 0.67 0.224506
Target:  5'- gUUGGCuCGACGcCGGCGcGgCCGCuGUUg -3'
miRNA:   3'- -AGCCGuGCUGCaGCCGC-CgGGCG-CGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.