miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 29769 0.67 0.236018
Target:  5'- gCGGC-CGG-GUCGGCGGacaCCauGCGCa -3'
miRNA:   3'- aGCCGuGCUgCAGCCGCCg--GG--CGCGa -5'
28032 5' -64.1 NC_005887.1 + 33476 0.67 0.224506
Target:  5'- gCGcGUACGGCGUCgcgaucucgacgGGCGcGCCgGCGUUc -3'
miRNA:   3'- aGC-CGUGCUGCAG------------CCGC-CGGgCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 41658 0.67 0.2151
Target:  5'- gUCGGCGagcagcaucgacuCGGCGagcagcagcaccuggUCGGCGGUCaUGCGCg -3'
miRNA:   3'- -AGCCGU-------------GCUGC---------------AGCCGCCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 29097 0.67 0.213475
Target:  5'- aUCGGCaACGAauCGaCGGCGGUCaGCGUc -3'
miRNA:   3'- -AGCCG-UGCU--GCaGCCGCCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 12868 0.67 0.236018
Target:  5'- -aGGCACGACcgUGGCaGGUgCCGUGCg -3'
miRNA:   3'- agCCGUGCUGcaGCCG-CCG-GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 11520 0.67 0.222262
Target:  5'- gCGGCAUgcagaugGACGUCGaacuggccgaggccGCGGUgCGCGCc -3'
miRNA:   3'- aGCCGUG-------CUGCAGC--------------CGCCGgGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 26697 0.67 0.217282
Target:  5'- cUCGGCGCGcaucuGCGacacggcgcccugaUCGGCGaGCCCGgcCGCc -3'
miRNA:   3'- -AGCCGUGC-----UGC--------------AGCCGC-CGGGC--GCGa -5'
28032 5' -64.1 NC_005887.1 + 20860 0.68 0.173913
Target:  5'- gCGGUaACGGUGUUGGCGGCCUgaaugauagugGCGCc -3'
miRNA:   3'- aGCCG-UGCUGCAGCCGCCGGG-----------CGCGa -5'
28032 5' -64.1 NC_005887.1 + 6858 0.68 0.192807
Target:  5'- gUCGGaccuCGCGACGUCGGCcaa-CGCGCa -3'
miRNA:   3'- -AGCC----GUGCUGCAGCCGccggGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 32290 0.68 0.192807
Target:  5'- aCGGgGCGAuCGUCGGgcCaGCCgGCGCg -3'
miRNA:   3'- aGCCgUGCU-GCAGCC--GcCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 30152 0.68 0.194792
Target:  5'- gUCGGCGcCGAUGcCGGCGucgaagucgcggaacGCCUGCaGCUu -3'
miRNA:   3'- -AGCCGU-GCUGCaGCCGC---------------CGGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 14600 0.68 0.197803
Target:  5'- gUCGGUACG-CGUaCGGCcGUCgGCGCc -3'
miRNA:   3'- -AGCCGUGCuGCA-GCCGcCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 37766 0.68 0.202913
Target:  5'- aUCuGCGCGGCcugcgccUCGGCGGCuuGCuGCg -3'
miRNA:   3'- -AGcCGUGCUGc------AGCCGCCGggCG-CGa -5'
28032 5' -64.1 NC_005887.1 + 32425 0.68 0.192313
Target:  5'- cCGGCgGCGAUGUggcCGGCGGCgaucaggUUGCGCa -3'
miRNA:   3'- aGCCG-UGCUGCA---GCCGCCG-------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 23081 0.68 0.202913
Target:  5'- cUCGGUuucuuGCGUCGGCGGCaCCaaGCg -3'
miRNA:   3'- -AGCCGugc--UGCAGCCGCCG-GGcgCGa -5'
28032 5' -64.1 NC_005887.1 + 34242 0.68 0.202913
Target:  5'- gCGGCGCcucGGCGagcgCGGCGaGCUgCGCGCg -3'
miRNA:   3'- aGCCGUG---CUGCa---GCCGC-CGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 14642 0.68 0.183145
Target:  5'- aCGGCAgcCGGCG-CGGUGcuGCCCGuCGCc -3'
miRNA:   3'- aGCCGU--GCUGCaGCCGC--CGGGC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 11551 0.68 0.178476
Target:  5'- cUCGGCGCGcaGCGcgCGGCGG-UCGCGg- -3'
miRNA:   3'- -AGCCGUGC--UGCa-GCCGCCgGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 3856 0.68 0.178476
Target:  5'- gUCGGCAcCGACGauguguacggCGGCaGCCCG-GCa -3'
miRNA:   3'- -AGCCGU-GCUGCa---------GCCGcCGGGCgCGa -5'
28032 5' -64.1 NC_005887.1 + 21797 0.68 0.192807
Target:  5'- cCGGCaucaacACGACGUCcGCGGCgcugCCGgGCg -3'
miRNA:   3'- aGCCG------UGCUGCAGcCGCCG----GGCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.