miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 40788 0.66 0.241957
Target:  5'- cCGGCGguCGAgGUucgUGGCGGCgaCGCGCc -3'
miRNA:   3'- aGCCGU--GCUgCA---GCCGCCGg-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 32974 0.66 0.241358
Target:  5'- gCGGCGCGAaacugcucuuguuCcUCGGUGGUCaUGCGCg -3'
miRNA:   3'- aGCCGUGCU-------------GcAGCCGCCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 32731 0.66 0.273535
Target:  5'- aCGGCgggguagcGCGGCGcucgCGuGCGcGCCgGCGCg -3'
miRNA:   3'- aGCCG--------UGCUGCa---GC-CGC-CGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 35679 0.66 0.241957
Target:  5'- gCaGCGCG-CGaUCGGCGGCCgGCuucGCg -3'
miRNA:   3'- aGcCGUGCuGC-AGCCGCCGGgCG---CGa -5'
28032 5' -64.1 NC_005887.1 + 37662 0.66 0.265019
Target:  5'- aUCGGCGCGcccaucagacccucGcCGUCugcgcaGCGGUCUGCGCg -3'
miRNA:   3'- -AGCCGUGC--------------U-GCAGc-----CGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 25838 0.66 0.254208
Target:  5'- cCGGCgGCGACG-CGauCGGCCUGCGaCa -3'
miRNA:   3'- aGCCG-UGCUGCaGCc-GCCGGGCGC-Ga -5'
28032 5' -64.1 NC_005887.1 + 9025 0.67 0.213475
Target:  5'- cUCuGCAgcccgUGACGuuugUCGGCGGCCCGUucGCg -3'
miRNA:   3'- -AGcCGU-----GCUGC----AGCCGCCGGGCG--CGa -5'
28032 5' -64.1 NC_005887.1 + 860 0.67 0.218931
Target:  5'- -aGGUGCccGugGaCGcGUGGCCCGCGCc -3'
miRNA:   3'- agCCGUG--CugCaGC-CGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 12599 0.67 0.212936
Target:  5'- cCGGcCGCGACGcUCGGCGugcugacgcagaaGCCCGaccaGCc -3'
miRNA:   3'- aGCC-GUGCUGC-AGCCGC-------------CGGGCg---CGa -5'
28032 5' -64.1 NC_005887.1 + 36299 0.67 0.207609
Target:  5'- cCGGUugGccgaucuGCG-CGGCGGUcgacgCCGCGCa -3'
miRNA:   3'- aGCCGugC-------UGCaGCCGCCG-----GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 14463 0.67 0.218931
Target:  5'- cCGuGCAaGGCGUCGuGUcgGGCCuCGCGCa -3'
miRNA:   3'- aGC-CGUgCUGCAGC-CG--CCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 36036 0.67 0.222821
Target:  5'- cUCGGCGcCGGCGa-GGCGcaaggccucgacgcGCUCGCGCa -3'
miRNA:   3'- -AGCCGU-GCUGCagCCGC--------------CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 22780 0.67 0.224506
Target:  5'- gUUGGCuCGACGcCGGCGcGgCCGCuGUUg -3'
miRNA:   3'- -AGCCGuGCUGCaGCCGC-CgGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 40499 0.67 0.224506
Target:  5'- gUGGCGCGACGUCGuguuCGGCauccaccaCGCGg- -3'
miRNA:   3'- aGCCGUGCUGCAGCc---GCCGg-------GCGCga -5'
28032 5' -64.1 NC_005887.1 + 15439 0.67 0.229626
Target:  5'- uUCGGUcaaccggACGACGUCGccGCGaugaCCGCGCa -3'
miRNA:   3'- -AGCCG-------UGCUGCAGC--CGCcg--GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 8697 0.67 0.236018
Target:  5'- -gGGCcCGGCGauccgccgCGGCGGUaaGCGCUu -3'
miRNA:   3'- agCCGuGCUGCa-------GCCGCCGggCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 12868 0.67 0.236018
Target:  5'- -aGGCACGACcgUGGCaGGUgCCGUGCg -3'
miRNA:   3'- agCCGUGCUGcaGCCG-CCG-GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 18340 0.67 0.236018
Target:  5'- aUCGGCgacauGCGACGUUcgGGCGacuUCCGCGUa -3'
miRNA:   3'- -AGCCG-----UGCUGCAG--CCGCc--GGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 30435 0.67 0.236018
Target:  5'- -aGGC-CGACGUCGG-GGCggggcauguugCCGgGCUg -3'
miRNA:   3'- agCCGuGCUGCAGCCgCCG-----------GGCgCGA- -5'
28032 5' -64.1 NC_005887.1 + 39398 0.67 0.236018
Target:  5'- cCGGCGagGAUGgucgCGGCGGUgCCGCGg- -3'
miRNA:   3'- aGCCGUg-CUGCa---GCCGCCG-GGCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.