miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 13493 0.65 0.27821
Target:  5'- cCGGCgcaucuuuccgaaaACGAUGUCuGGCGuCCCGgGCc -3'
miRNA:   3'- aGCCG--------------UGCUGCAG-CCGCcGGGCgCGa -5'
28032 5' -64.1 NC_005887.1 + 24501 0.65 0.279558
Target:  5'- gUCGuCGCGAgguUGUCGGUGccccaccgauugaGCCCGUGCUc -3'
miRNA:   3'- -AGCcGUGCU---GCAGCCGC-------------CGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 35679 0.66 0.241957
Target:  5'- gCaGCGCG-CGaUCGGCGGCCgGCuucGCg -3'
miRNA:   3'- aGcCGUGCuGC-AGCCGCCGGgCG---CGa -5'
28032 5' -64.1 NC_005887.1 + 34947 0.66 0.273535
Target:  5'- cCGGCuuCGAacUCGGCgGGCgUGCGCa -3'
miRNA:   3'- aGCCGu-GCUgcAGCCG-CCGgGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 40788 0.66 0.241957
Target:  5'- cCGGCGguCGAgGUucgUGGCGGCgaCGCGCc -3'
miRNA:   3'- aGCCGU--GCUgCA---GCCGCCGg-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 32974 0.66 0.241358
Target:  5'- gCGGCGCGAaacugcucuuguuCcUCGGUGGUCaUGCGCg -3'
miRNA:   3'- aGCCGUGCU-------------GcAGCCGCCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 18937 0.66 0.254208
Target:  5'- cUCGcaGCGGcCGUCGGCGGCCaauaCGCa -3'
miRNA:   3'- -AGCcgUGCU-GCAGCCGCCGGgc--GCGa -5'
28032 5' -64.1 NC_005887.1 + 32731 0.66 0.273535
Target:  5'- aCGGCgggguagcGCGGCGcucgCGuGCGcGCCgGCGCg -3'
miRNA:   3'- aGCCG--------UGCUGCa---GC-CGC-CGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17744 0.66 0.24802
Target:  5'- cUCGGCACGGC--CGcGCGGCUgaugGCGCc -3'
miRNA:   3'- -AGCCGUGCUGcaGC-CGCCGGg---CGCGa -5'
28032 5' -64.1 NC_005887.1 + 9613 0.66 0.24802
Target:  5'- aUCGGCuuugccugaugcGCGAC--CGGUGGCUCGCGa- -3'
miRNA:   3'- -AGCCG------------UGCUGcaGCCGCCGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 23920 0.66 0.254208
Target:  5'- gCGGUcguaucgcgAUGACGUCGGCcucgcGGCguCUGCGCa -3'
miRNA:   3'- aGCCG---------UGCUGCAGCCG-----CCG--GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 29378 0.66 0.266965
Target:  5'- gCGGCAUGcCcUCGGCccauGCCgGCGCg -3'
miRNA:   3'- aGCCGUGCuGcAGCCGc---CGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 37662 0.66 0.265019
Target:  5'- aUCGGCGCGcccaucagacccucGcCGUCugcgcaGCGGUCUGCGCg -3'
miRNA:   3'- -AGCCGUGC--------------U-GCAGc-----CGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 10377 0.66 0.266965
Target:  5'- aCGGCGugcCGACGUCGacuaucgcCGGCCuCGgGCa -3'
miRNA:   3'- aGCCGU---GCUGCAGCc-------GCCGG-GCgCGa -5'
28032 5' -64.1 NC_005887.1 + 14567 0.66 0.266965
Target:  5'- gUCGGCGcCGuCGUCauGGCGcucuaccucGCCgGCGCg -3'
miRNA:   3'- -AGCCGU-GCuGCAG--CCGC---------CGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 36069 0.66 0.260523
Target:  5'- cCGGUGCGAaccgaCGUgCGGUGGCCUGuCGgUa -3'
miRNA:   3'- aGCCGUGCU-----GCA-GCCGCCGGGC-GCgA- -5'
28032 5' -64.1 NC_005887.1 + 30128 0.66 0.266965
Target:  5'- -aGGUuuGGCGUgaaaucCGGCGcGCCCgGCGCg -3'
miRNA:   3'- agCCGugCUGCA------GCCGC-CGGG-CGCGa -5'
28032 5' -64.1 NC_005887.1 + 13619 0.66 0.254208
Target:  5'- gCaGCGCGGCGcgCGGCGG-CCGCa-- -3'
miRNA:   3'- aGcCGUGCUGCa-GCCGCCgGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 33833 0.66 0.254208
Target:  5'- gUCGGCGCGGCGaUCgaacgcaugcagGGCGuacgaGCCUGCGg- -3'
miRNA:   3'- -AGCCGUGCUGC-AG------------CCGC-----CGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 28365 0.66 0.266965
Target:  5'- uUCGaGCACGaacGCGUCGaCGGCUuCGCgGCUg -3'
miRNA:   3'- -AGC-CGUGC---UGCAGCcGCCGG-GCG-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.