Results 1 - 20 of 127 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 24501 | 0.65 | 0.279558 |
Target: 5'- gUCGuCGCGAgguUGUCGGUGccccaccgauugaGCCCGUGCUc -3' miRNA: 3'- -AGCcGUGCU---GCAGCCGC-------------CGGGCGCGA- -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 13493 | 0.65 | 0.27821 |
Target: 5'- cCGGCgcaucuuuccgaaaACGAUGUCuGGCGuCCCGgGCc -3' miRNA: 3'- aGCCG--------------UGCUGCAG-CCGCcGGGCgCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 28365 | 0.66 | 0.266965 |
Target: 5'- uUCGaGCACGaacGCGUCGaCGGCUuCGCgGCUg -3' miRNA: 3'- -AGC-CGUGC---UGCAGCcGCCGG-GCG-CGA- -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 37662 | 0.66 | 0.265019 |
Target: 5'- aUCGGCGCGcccaucagacccucGcCGUCugcgcaGCGGUCUGCGCg -3' miRNA: 3'- -AGCCGUGC--------------U-GCAGc-----CGCCGGGCGCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 10377 | 0.66 | 0.266965 |
Target: 5'- aCGGCGugcCGACGUCGacuaucgcCGGCCuCGgGCa -3' miRNA: 3'- aGCCGU---GCUGCAGCc-------GCCGG-GCgCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 9613 | 0.66 | 0.24802 |
Target: 5'- aUCGGCuuugccugaugcGCGAC--CGGUGGCUCGCGa- -3' miRNA: 3'- -AGCCG------------UGCUGcaGCCGCCGGGCGCga -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 13619 | 0.66 | 0.254208 |
Target: 5'- gCaGCGCGGCGcgCGGCGG-CCGCa-- -3' miRNA: 3'- aGcCGUGCUGCa-GCCGCCgGGCGcga -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 18937 | 0.66 | 0.254208 |
Target: 5'- cUCGcaGCGGcCGUCGGCGGCCaauaCGCa -3' miRNA: 3'- -AGCcgUGCU-GCAGCCGCCGGgc--GCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 35679 | 0.66 | 0.241957 |
Target: 5'- gCaGCGCG-CGaUCGGCGGCCgGCuucGCg -3' miRNA: 3'- aGcCGUGCuGC-AGCCGCCGGgCG---CGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 40788 | 0.66 | 0.241957 |
Target: 5'- cCGGCGguCGAgGUucgUGGCGGCgaCGCGCc -3' miRNA: 3'- aGCCGU--GCUgCA---GCCGCCGg-GCGCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 34947 | 0.66 | 0.273535 |
Target: 5'- cCGGCuuCGAacUCGGCgGGCgUGCGCa -3' miRNA: 3'- aGCCGu-GCUgcAGCCG-CCGgGCGCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 23920 | 0.66 | 0.254208 |
Target: 5'- gCGGUcguaucgcgAUGACGUCGGCcucgcGGCguCUGCGCa -3' miRNA: 3'- aGCCG---------UGCUGCAGCCG-----CCG--GGCGCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 32731 | 0.66 | 0.273535 |
Target: 5'- aCGGCgggguagcGCGGCGcucgCGuGCGcGCCgGCGCg -3' miRNA: 3'- aGCCG--------UGCUGCa---GC-CGC-CGGgCGCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 33833 | 0.66 | 0.254208 |
Target: 5'- gUCGGCGCGGCGaUCgaacgcaugcagGGCGuacgaGCCUGCGg- -3' miRNA: 3'- -AGCCGUGCUGC-AG------------CCGC-----CGGGCGCga -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 30128 | 0.66 | 0.266965 |
Target: 5'- -aGGUuuGGCGUgaaaucCGGCGcGCCCgGCGCg -3' miRNA: 3'- agCCGugCUGCA------GCCGC-CGGG-CGCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 36069 | 0.66 | 0.260523 |
Target: 5'- cCGGUGCGAaccgaCGUgCGGUGGCCUGuCGgUa -3' miRNA: 3'- aGCCGUGCU-----GCA-GCCGCCGGGC-GCgA- -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 14567 | 0.66 | 0.266965 |
Target: 5'- gUCGGCGcCGuCGUCauGGCGcucuaccucGCCgGCGCg -3' miRNA: 3'- -AGCCGU-GCuGCAG--CCGC---------CGGgCGCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 29378 | 0.66 | 0.266965 |
Target: 5'- gCGGCAUGcCcUCGGCccauGCCgGCGCg -3' miRNA: 3'- aGCCGUGCuGcAGCCGc---CGGgCGCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 17744 | 0.66 | 0.24802 |
Target: 5'- cUCGGCACGGC--CGcGCGGCUgaugGCGCc -3' miRNA: 3'- -AGCCGUGCUGcaGC-CGCCGGg---CGCGa -5' |
|||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 32974 | 0.66 | 0.241358 |
Target: 5'- gCGGCGCGAaacugcucuuguuCcUCGGUGGUCaUGCGCg -3' miRNA: 3'- aGCCGUGCU-------------GcAGCCGCCGG-GCGCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home