miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 41590 0.8 0.021538
Target:  5'- gUCGGCcaGCGGCGgcccaggugCGGCGGCCgGCGCg -3'
miRNA:   3'- -AGCCG--UGCUGCa--------GCCGCCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 5827 0.7 0.137333
Target:  5'- gUCGGCGCGG-GUCGcgaagggcgaaGCGGagcucaCCGCGCUg -3'
miRNA:   3'- -AGCCGUGCUgCAGC-----------CGCCg-----GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 5133 0.7 0.13697
Target:  5'- cUCGGCAugaccgcgcugccCGACGUCGGCGcGCCgcUGaUGCUg -3'
miRNA:   3'- -AGCCGU-------------GCUGCAGCCGC-CGG--GC-GCGA- -5'
28032 5' -64.1 NC_005887.1 + 4620 0.7 0.123457
Target:  5'- cUCGcCGCGGCGcCGGUGGCCgccgGCGCg -3'
miRNA:   3'- -AGCcGUGCUGCaGCCGCCGGg---CGCGa -5'
28032 5' -64.1 NC_005887.1 + 1486 0.71 0.117017
Target:  5'- aCGGCguGCGGCGcUCGcGCGGCgcggCCGUGCg -3'
miRNA:   3'- aGCCG--UGCUGC-AGC-CGCCG----GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 21267 0.71 0.113916
Target:  5'- -gGGCACcGCGgCGGCGGCguaUGCGCUg -3'
miRNA:   3'- agCCGUGcUGCaGCCGCCGg--GCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 3493 0.71 0.112092
Target:  5'- aUCGaGCACGACGUCGGCaagGGCaucgucuaccgcaaCGUGCc -3'
miRNA:   3'- -AGC-CGUGCUGCAGCCG---CCGg-------------GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 15845 0.72 0.094272
Target:  5'- gCGGCGCGAuCGagGGaaacGCCCGCGCg -3'
miRNA:   3'- aGCCGUGCU-GCagCCgc--CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 26205 0.73 0.084532
Target:  5'- aCGGgGCGGCGgUGGcCGGCCUGCaGCUg -3'
miRNA:   3'- aGCCgUGCUGCaGCC-GCCGGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 10911 0.75 0.054375
Target:  5'- cCGGCGCagauGACGUCGGcCGGCCUGCu-- -3'
miRNA:   3'- aGCCGUG----CUGCAGCC-GCCGGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 14204 0.75 0.052884
Target:  5'- -gGGCGCGGCcUCggacagGGCGGCgCCGCGCUg -3'
miRNA:   3'- agCCGUGCUGcAG------CCGCCG-GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 30946 0.75 0.051433
Target:  5'- cUCGGCgguGAUGUCGGC-GCCCGCGUa -3'
miRNA:   3'- -AGCCGug-CUGCAGCCGcCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 22202 0.76 0.050021
Target:  5'- cCGGCGCGGCGgucgcauauuaCGGUGGCCCGCu-- -3'
miRNA:   3'- aGCCGUGCUGCa----------GCCGCCGGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 17538 0.76 0.043508
Target:  5'- gCGGCAUGACGUCGGuCGGCgCGUaCUg -3'
miRNA:   3'- aGCCGUGCUGCAGCC-GCCGgGCGcGA- -5'
28032 5' -64.1 NC_005887.1 + 26072 0.77 0.037826
Target:  5'- cUGGUcaGCG-CGUCaGCGGCCCGCGCg -3'
miRNA:   3'- aGCCG--UGCuGCAGcCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 14530 0.78 0.036167
Target:  5'- -aGGCGCGGcCGUCGGCGGCgcgucgaucggcaugUCGCGCg -3'
miRNA:   3'- agCCGUGCU-GCAGCCGCCG---------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 23235 0.78 0.032874
Target:  5'- aCGGCACGcgaGCGgCGGCGGUCgGCGCg -3'
miRNA:   3'- aGCCGUGC---UGCaGCCGCCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17275 0.79 0.026995
Target:  5'- -gGGCGaGACGUCGGgCGGCgCCGCGCg -3'
miRNA:   3'- agCCGUgCUGCAGCC-GCCG-GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 13397 0.8 0.024805
Target:  5'- cCGGCGCggcgGACGUCGGCGGCaagCCGCuGCUg -3'
miRNA:   3'- aGCCGUG----CUGCAGCCGCCG---GGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 18622 0.82 0.016228
Target:  5'- cUCGGCAgcGCGaUCGGCGGCCCGCuGCUg -3'
miRNA:   3'- -AGCCGUgcUGC-AGCCGCCGGGCG-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.