miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 24501 0.65 0.279558
Target:  5'- gUCGuCGCGAgguUGUCGGUGccccaccgauugaGCCCGUGCUc -3'
miRNA:   3'- -AGCcGUGCU---GCAGCCGC-------------CGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 26697 0.67 0.217282
Target:  5'- cUCGGCGCGcaucuGCGacacggcgcccugaUCGGCGaGCCCGgcCGCc -3'
miRNA:   3'- -AGCCGUGC-----UGC--------------AGCCGC-CGGGC--GCGa -5'
28032 5' -64.1 NC_005887.1 + 29097 0.67 0.213475
Target:  5'- aUCGGCaACGAauCGaCGGCGGUCaGCGUc -3'
miRNA:   3'- -AGCCG-UGCU--GCaGCCGCCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 24204 1.07 0.000179
Target:  5'- uUCGGCACGACGUCGGCGGCCCGCGCUu -3'
miRNA:   3'- -AGCCGUGCUGCAGCCGCCGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 37662 0.66 0.265019
Target:  5'- aUCGGCGCGcccaucagacccucGcCGUCugcgcaGCGGUCUGCGCg -3'
miRNA:   3'- -AGCCGUGC--------------U-GCAGc-----CGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 36069 0.66 0.260523
Target:  5'- cCGGUGCGAaccgaCGUgCGGUGGCCUGuCGgUa -3'
miRNA:   3'- aGCCGUGCU-----GCA-GCCGCCGGGC-GCgA- -5'
28032 5' -64.1 NC_005887.1 + 25838 0.66 0.254208
Target:  5'- cCGGCgGCGACG-CGauCGGCCUGCGaCa -3'
miRNA:   3'- aGCCG-UGCUGCaGCc-GCCGGGCGC-Ga -5'
28032 5' -64.1 NC_005887.1 + 39981 0.66 0.24802
Target:  5'- aCGGCGUGucuuCGUCGuCGGCCUGCGa- -3'
miRNA:   3'- aGCCGUGCu---GCAGCcGCCGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 38468 0.66 0.241957
Target:  5'- cCGGCAUGGCGUCGuaugcCGGgCUGcCGCc -3'
miRNA:   3'- aGCCGUGCUGCAGCc----GCCgGGC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 11520 0.67 0.222262
Target:  5'- gCGGCAUgcagaugGACGUCGaacuggccgaggccGCGGUgCGCGCc -3'
miRNA:   3'- aGCCGUG-------CUGCAGC--------------CGCCGgGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 33417 0.67 0.236018
Target:  5'- gUCGGCGCucuGCGUCGcGCGGaUCGCGa- -3'
miRNA:   3'- -AGCCGUGc--UGCAGC-CGCCgGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 38115 0.66 0.24802
Target:  5'- gCGGC-CGAgCGUCGGCGcgagcagcacGCCuuucuccugcgCGCGCUg -3'
miRNA:   3'- aGCCGuGCU-GCAGCCGC----------CGG-----------GCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 13493 0.65 0.27821
Target:  5'- cCGGCgcaucuuuccgaaaACGAUGUCuGGCGuCCCGgGCc -3'
miRNA:   3'- aGCCG--------------UGCUGCAG-CCGCcGGGCgCGa -5'
28032 5' -64.1 NC_005887.1 + 29769 0.67 0.236018
Target:  5'- gCGGC-CGG-GUCGGCGGacaCCauGCGCa -3'
miRNA:   3'- aGCCGuGCUgCAGCCGCCg--GG--CGCGa -5'
28032 5' -64.1 NC_005887.1 + 14567 0.66 0.266965
Target:  5'- gUCGGCGcCGuCGUCauGGCGcucuaccucGCCgGCGCg -3'
miRNA:   3'- -AGCCGU-GCuGCAG--CCGC---------CGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 40554 0.66 0.24802
Target:  5'- gCGGCACGuccuuCGgguaGCGGCCgaCGCGCa -3'
miRNA:   3'- aGCCGUGCu----GCagc-CGCCGG--GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 33476 0.67 0.224506
Target:  5'- gCGcGUACGGCGUCgcgaucucgacgGGCGcGCCgGCGUUc -3'
miRNA:   3'- aGC-CGUGCUGCAG------------CCGC-CGGgCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 41658 0.67 0.2151
Target:  5'- gUCGGCGagcagcaucgacuCGGCGagcagcagcaccuggUCGGCGGUCaUGCGCg -3'
miRNA:   3'- -AGCCGU-------------GCUGC---------------AGCCGCCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 30128 0.66 0.266965
Target:  5'- -aGGUuuGGCGUgaaaucCGGCGcGCCCgGCGCg -3'
miRNA:   3'- agCCGugCUGCA------GCCGC-CGGG-CGCGa -5'
28032 5' -64.1 NC_005887.1 + 345 0.66 0.260523
Target:  5'- gCGGCGacacuCGACGUgGGCcGCaggCCGUGCUg -3'
miRNA:   3'- aGCCGU-----GCUGCAgCCGcCG---GGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.