Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 24204 | 1.07 | 0.000179 |
Target: 5'- uUCGGCACGACGUCGGCGGCCCGCGCUu -3' miRNA: 3'- -AGCCGUGCUGCAGCCGCCGGGCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 26409 | 0.82 | 0.015774 |
Target: 5'- gCGGCGCGugGcCGGCgcaucgauuccGGCCCGCGCg -3' miRNA: 3'- aGCCGUGCugCaGCCG-----------CCGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 18622 | 0.82 | 0.016228 |
Target: 5'- cUCGGCAgcGCGaUCGGCGGCCCGCuGCUg -3' miRNA: 3'- -AGCCGUgcUGC-AGCCGCCGGGCG-CGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 41815 | 0.82 | 0.016694 |
Target: 5'- cCGGCGCGGCGcgCGGCGGCCgaCGCGUUc -3' miRNA: 3'- aGCCGUGCUGCa-GCCGCCGG--GCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 24383 | 0.81 | 0.018175 |
Target: 5'- gCGGC-CGAUGcCGGCGaGCCCGCGCa -3' miRNA: 3'- aGCCGuGCUGCaGCCGC-CGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 41590 | 0.8 | 0.021538 |
Target: 5'- gUCGGCcaGCGGCGgcccaggugCGGCGGCCgGCGCg -3' miRNA: 3'- -AGCCG--UGCUGCa--------GCCGCCGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 13397 | 0.8 | 0.024805 |
Target: 5'- cCGGCGCggcgGACGUCGGCGGCaagCCGCuGCUg -3' miRNA: 3'- aGCCGUG----CUGCAGCCGCCG---GGCG-CGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 17275 | 0.79 | 0.026995 |
Target: 5'- -gGGCGaGACGUCGGgCGGCgCCGCGCg -3' miRNA: 3'- agCCGUgCUGCAGCC-GCCG-GGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 23235 | 0.78 | 0.032874 |
Target: 5'- aCGGCACGcgaGCGgCGGCGGUCgGCGCg -3' miRNA: 3'- aGCCGUGC---UGCaGCCGCCGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 14530 | 0.78 | 0.036167 |
Target: 5'- -aGGCGCGGcCGUCGGCGGCgcgucgaucggcaugUCGCGCg -3' miRNA: 3'- agCCGUGCU-GCAGCCGCCG---------------GGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 17394 | 0.77 | 0.037826 |
Target: 5'- gCGGcCGCG-CGcaaGGCGGCCCGCGCg -3' miRNA: 3'- aGCC-GUGCuGCag-CCGCCGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 26072 | 0.77 | 0.037826 |
Target: 5'- cUGGUcaGCG-CGUCaGCGGCCCGCGCg -3' miRNA: 3'- aGCCG--UGCuGCAGcCGCCGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 17538 | 0.76 | 0.043508 |
Target: 5'- gCGGCAUGACGUCGGuCGGCgCGUaCUg -3' miRNA: 3'- aGCCGUGCUGCAGCC-GCCGgGCGcGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 22202 | 0.76 | 0.050021 |
Target: 5'- cCGGCGCGGCGgucgcauauuaCGGUGGCCCGCu-- -3' miRNA: 3'- aGCCGUGCUGCa----------GCCGCCGGGCGcga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30946 | 0.75 | 0.051433 |
Target: 5'- cUCGGCgguGAUGUCGGC-GCCCGCGUa -3' miRNA: 3'- -AGCCGug-CUGCAGCCGcCGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 14204 | 0.75 | 0.052884 |
Target: 5'- -gGGCGCGGCcUCggacagGGCGGCgCCGCGCUg -3' miRNA: 3'- agCCGUGCUGcAG------CCGCCG-GGCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 10911 | 0.75 | 0.054375 |
Target: 5'- cCGGCGCagauGACGUCGGcCGGCCUGCu-- -3' miRNA: 3'- aGCCGUG----CUGCAGCC-GCCGGGCGcga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 27358 | 0.75 | 0.059096 |
Target: 5'- gCGGCACGccuGCGgccUGcGCGGCCUGCGCg -3' miRNA: 3'- aGCCGUGC---UGCa--GC-CGCCGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 14758 | 0.74 | 0.069755 |
Target: 5'- uUCGaCACGACGcucgaCGGCGcGCUCGCGCUg -3' miRNA: 3'- -AGCcGUGCUGCa----GCCGC-CGGGCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30217 | 0.73 | 0.082252 |
Target: 5'- cUGGCGCG-CGaCGGCGGCCUgcucguccugGCGCUu -3' miRNA: 3'- aGCCGUGCuGCaGCCGCCGGG----------CGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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