miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 30217 0.73 0.082252
Target:  5'- cUGGCGCG-CGaCGGCGGCCUgcucguccugGCGCUu -3'
miRNA:   3'- aGCCGUGCuGCaGCCGCCGGG----------CGCGA- -5'
28032 5' -64.1 NC_005887.1 + 26205 0.73 0.084532
Target:  5'- aCGGgGCGGCGgUGGcCGGCCUGCaGCUg -3'
miRNA:   3'- aGCCgUGCUGCaGCC-GCCGGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 33206 0.72 0.089276
Target:  5'- aCGuGC-CGACGUCGGaCGGCCUgaauaccgauGCGCUu -3'
miRNA:   3'- aGC-CGuGCUGCAGCC-GCCGGG----------CGCGA- -5'
28032 5' -64.1 NC_005887.1 + 7655 0.72 0.094272
Target:  5'- --aGCGCGACGaCGGCcGCCCGCuGCUg -3'
miRNA:   3'- agcCGUGCUGCaGCCGcCGGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 15845 0.72 0.094272
Target:  5'- gCGGCGCGAuCGagGGaaacGCCCGCGCg -3'
miRNA:   3'- aGCCGUGCU-GCagCCgc--CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 3493 0.71 0.112092
Target:  5'- aUCGaGCACGACGUCGGCaagGGCaucgucuaccgcaaCGUGCc -3'
miRNA:   3'- -AGC-CGUGCUGCAGCCG---CCGg-------------GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 2507 0.71 0.113916
Target:  5'- gCGGUcgauUGAUGUgcgaCGGCGGCCCGuCGCg -3'
miRNA:   3'- aGCCGu---GCUGCA----GCCGCCGGGC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 21267 0.71 0.113916
Target:  5'- -gGGCACcGCGgCGGCGGCguaUGCGCUg -3'
miRNA:   3'- agCCGUGcUGCaGCCGCCGg--GCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 585 0.71 0.116704
Target:  5'- gUCGGCACGACcUCGaucGUGgucuucgaccagaGCCCGCGCg -3'
miRNA:   3'- -AGCCGUGCUGcAGC---CGC-------------CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 1486 0.71 0.117017
Target:  5'- aCGGCguGCGGCGcUCGcGCGGCgcggCCGUGCg -3'
miRNA:   3'- aGCCG--UGCUGC-AGC-CGCCG----GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 4620 0.7 0.123457
Target:  5'- cUCGcCGCGGCGcCGGUGGCCgccgGCGCg -3'
miRNA:   3'- -AGCcGUGCUGCaGCCGCCGGg---CGCGa -5'
28032 5' -64.1 NC_005887.1 + 26631 0.7 0.133736
Target:  5'- cUGGCGCGucagcuccuucACGcCGGCGGCggaaucauccggCCGCGCg -3'
miRNA:   3'- aGCCGUGC-----------UGCaGCCGCCG------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 9600 0.7 0.133736
Target:  5'- aUGGCGCG-CGcCGGCGcGCacgcgagcgCCGCGCUa -3'
miRNA:   3'- aGCCGUGCuGCaGCCGC-CG---------GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 5133 0.7 0.13697
Target:  5'- cUCGGCAugaccgcgcugccCGACGUCGGCGcGCCgcUGaUGCUg -3'
miRNA:   3'- -AGCCGU-------------GCUGCAGCCGC-CGG--GC-GCGA- -5'
28032 5' -64.1 NC_005887.1 + 5827 0.7 0.137333
Target:  5'- gUCGGCGCGG-GUCGcgaagggcgaaGCGGagcucaCCGCGCUg -3'
miRNA:   3'- -AGCCGUGCUgCAGC-----------CGCCg-----GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 10072 0.7 0.139905
Target:  5'- cCaGCAgGAgccgcauuccgucgUGUgGGCGGCCCGCGCc -3'
miRNA:   3'- aGcCGUgCU--------------GCAgCCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 30476 0.7 0.14102
Target:  5'- gCGGUGCG-CGaC-GCGGCCCGUGCg -3'
miRNA:   3'- aGCCGUGCuGCaGcCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17333 0.7 0.14102
Target:  5'- cCGGCugGcCGgCGGCcGCCgGCGCg -3'
miRNA:   3'- aGCCGugCuGCaGCCGcCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 29486 0.7 0.14102
Target:  5'- aCaGCACGAUGUcguagcCGGCGGCCUcgacggcggGCGCg -3'
miRNA:   3'- aGcCGUGCUGCA------GCCGCCGGG---------CGCGa -5'
28032 5' -64.1 NC_005887.1 + 40537 0.7 0.144797
Target:  5'- gCGGCAgCGACGaCGGUcugGcGCUCGCGCa -3'
miRNA:   3'- aGCCGU-GCUGCaGCCG---C-CGGGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.