Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 40554 | 0.66 | 0.24802 |
Target: 5'- gCGGCACGuccuuCGgguaGCGGCCgaCGCGCa -3' miRNA: 3'- aGCCGUGCu----GCagc-CGCCGG--GCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 39981 | 0.66 | 0.24802 |
Target: 5'- aCGGCGUGucuuCGUCGuCGGCCUGCGa- -3' miRNA: 3'- aGCCGUGCu---GCAGCcGCCGGGCGCga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 40788 | 0.66 | 0.241957 |
Target: 5'- cCGGCGguCGAgGUucgUGGCGGCgaCGCGCc -3' miRNA: 3'- aGCCGU--GCUgCA---GCCGCCGg-GCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 38468 | 0.66 | 0.241957 |
Target: 5'- cCGGCAUGGCGUCGuaugcCGGgCUGcCGCc -3' miRNA: 3'- aGCCGUGCUGCAGCc----GCCgGGC-GCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 35679 | 0.66 | 0.241957 |
Target: 5'- gCaGCGCG-CGaUCGGCGGCCgGCuucGCg -3' miRNA: 3'- aGcCGUGCuGC-AGCCGCCGGgCG---CGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 32974 | 0.66 | 0.241358 |
Target: 5'- gCGGCGCGAaacugcucuuguuCcUCGGUGGUCaUGCGCg -3' miRNA: 3'- aGCCGUGCU-------------GcAGCCGCCGG-GCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 8697 | 0.67 | 0.236018 |
Target: 5'- -gGGCcCGGCGauccgccgCGGCGGUaaGCGCUu -3' miRNA: 3'- agCCGuGCUGCa-------GCCGCCGggCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 33417 | 0.67 | 0.236018 |
Target: 5'- gUCGGCGCucuGCGUCGcGCGGaUCGCGa- -3' miRNA: 3'- -AGCCGUGc--UGCAGC-CGCCgGGCGCga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 39398 | 0.67 | 0.236018 |
Target: 5'- cCGGCGagGAUGgucgCGGCGGUgCCGCGg- -3' miRNA: 3'- aGCCGUg-CUGCa---GCCGCCG-GGCGCga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 12868 | 0.67 | 0.236018 |
Target: 5'- -aGGCACGACcgUGGCaGGUgCCGUGCg -3' miRNA: 3'- agCCGUGCUGcaGCCG-CCG-GGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30435 | 0.67 | 0.236018 |
Target: 5'- -aGGC-CGACGUCGG-GGCggggcauguugCCGgGCUg -3' miRNA: 3'- agCCGuGCUGCAGCCgCCG-----------GGCgCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 18340 | 0.67 | 0.236018 |
Target: 5'- aUCGGCgacauGCGACGUUcgGGCGacuUCCGCGUa -3' miRNA: 3'- -AGCCG-----UGCUGCAG--CCGCc--GGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 29769 | 0.67 | 0.236018 |
Target: 5'- gCGGC-CGG-GUCGGCGGacaCCauGCGCa -3' miRNA: 3'- aGCCGuGCUgCAGCCGCCg--GG--CGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 15439 | 0.67 | 0.229626 |
Target: 5'- uUCGGUcaaccggACGACGUCGccGCGaugaCCGCGCa -3' miRNA: 3'- -AGCCG-------UGCUGCAGC--CGCcg--GGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 33476 | 0.67 | 0.224506 |
Target: 5'- gCGcGUACGGCGUCgcgaucucgacgGGCGcGCCgGCGUUc -3' miRNA: 3'- aGC-CGUGCUGCAG------------CCGC-CGGgCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 22780 | 0.67 | 0.224506 |
Target: 5'- gUUGGCuCGACGcCGGCGcGgCCGCuGUUg -3' miRNA: 3'- -AGCCGuGCUGCaGCCGC-CgGGCG-CGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 40499 | 0.67 | 0.224506 |
Target: 5'- gUGGCGCGACGUCGuguuCGGCauccaccaCGCGg- -3' miRNA: 3'- aGCCGUGCUGCAGCc---GCCGg-------GCGCga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 36036 | 0.67 | 0.222821 |
Target: 5'- cUCGGCGcCGGCGa-GGCGcaaggccucgacgcGCUCGCGCa -3' miRNA: 3'- -AGCCGU-GCUGCagCCGC--------------CGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 11520 | 0.67 | 0.222262 |
Target: 5'- gCGGCAUgcagaugGACGUCGaacuggccgaggccGCGGUgCGCGCc -3' miRNA: 3'- aGCCGUG-------CUGCAGC--------------CGCCGgGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 860 | 0.67 | 0.218931 |
Target: 5'- -aGGUGCccGugGaCGcGUGGCCCGCGCc -3' miRNA: 3'- agCCGUG--CugCaGC-CGCCGGGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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