miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 10072 0.7 0.139905
Target:  5'- cCaGCAgGAgccgcauuccgucgUGUgGGCGGCCCGCGCc -3'
miRNA:   3'- aGcCGUgCU--------------GCAgCCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 10377 0.66 0.266965
Target:  5'- aCGGCGugcCGACGUCGacuaucgcCGGCCuCGgGCa -3'
miRNA:   3'- aGCCGU---GCUGCAGCc-------GCCGG-GCgCGa -5'
28032 5' -64.1 NC_005887.1 + 10911 0.75 0.054375
Target:  5'- cCGGCGCagauGACGUCGGcCGGCCUGCu-- -3'
miRNA:   3'- aGCCGUG----CUGCAGCC-GCCGGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 11520 0.67 0.222262
Target:  5'- gCGGCAUgcagaugGACGUCGaacuggccgaggccGCGGUgCGCGCc -3'
miRNA:   3'- aGCCGUG-------CUGCAGC--------------CGCCGgGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 11551 0.68 0.178476
Target:  5'- cUCGGCGCGcaGCGcgCGGCGG-UCGCGg- -3'
miRNA:   3'- -AGCCGUGC--UGCa-GCCGCCgGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 12077 0.69 0.15546
Target:  5'- gUCGGCACGuCGcUCGGUcaGGUcaccgacgugcuggCCGCGCa -3'
miRNA:   3'- -AGCCGUGCuGC-AGCCG--CCG--------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 12080 0.69 0.152629
Target:  5'- gCGGCACGAuCGUcgcgcCGGaCGGCaaGCGCc -3'
miRNA:   3'- aGCCGUGCU-GCA-----GCC-GCCGggCGCGa -5'
28032 5' -64.1 NC_005887.1 + 12599 0.67 0.212936
Target:  5'- cCGGcCGCGACGcUCGGCGugcugacgcagaaGCCCGaccaGCc -3'
miRNA:   3'- aGCC-GUGCUGC-AGCCGC-------------CGGGCg---CGa -5'
28032 5' -64.1 NC_005887.1 + 12868 0.67 0.236018
Target:  5'- -aGGCACGACcgUGGCaGGUgCCGUGCg -3'
miRNA:   3'- agCCGUGCUGcaGCCG-CCG-GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 13397 0.8 0.024805
Target:  5'- cCGGCGCggcgGACGUCGGCGGCaagCCGCuGCUg -3'
miRNA:   3'- aGCCGUG----CUGCAGCCGCCG---GGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 13493 0.65 0.27821
Target:  5'- cCGGCgcaucuuuccgaaaACGAUGUCuGGCGuCCCGgGCc -3'
miRNA:   3'- aGCCG--------------UGCUGCAG-CCGCcGGGCgCGa -5'
28032 5' -64.1 NC_005887.1 + 13619 0.66 0.254208
Target:  5'- gCaGCGCGGCGcgCGGCGG-CCGCa-- -3'
miRNA:   3'- aGcCGUGCUGCa-GCCGCCgGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 13864 0.68 0.197299
Target:  5'- cCGGCGCGcgucuacuuCGUCGagcugaaGCGGCCCG-GCa -3'
miRNA:   3'- aGCCGUGCu--------GCAGC-------CGCCGGGCgCGa -5'
28032 5' -64.1 NC_005887.1 + 14204 0.75 0.052884
Target:  5'- -gGGCGCGGCcUCggacagGGCGGCgCCGCGCUg -3'
miRNA:   3'- agCCGUGCUGcAG------CCGCCG-GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 14463 0.67 0.218931
Target:  5'- cCGuGCAaGGCGUCGuGUcgGGCCuCGCGCa -3'
miRNA:   3'- aGC-CGUgCUGCAGC-CG--CCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 14530 0.78 0.036167
Target:  5'- -aGGCGCGGcCGUCGGCGGCgcgucgaucggcaugUCGCGCg -3'
miRNA:   3'- agCCGUGCU-GCAGCCGCCG---------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 14567 0.66 0.266965
Target:  5'- gUCGGCGcCGuCGUCauGGCGcucuaccucGCCgGCGCg -3'
miRNA:   3'- -AGCCGU-GCuGCAG--CCGC---------CGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 14600 0.68 0.197803
Target:  5'- gUCGGUACG-CGUaCGGCcGUCgGCGCc -3'
miRNA:   3'- -AGCCGUGCuGCA-GCCGcCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 14642 0.68 0.183145
Target:  5'- aCGGCAgcCGGCG-CGGUGcuGCCCGuCGCc -3'
miRNA:   3'- aGCCGU--GCUGCaGCCGC--CGGGC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 14758 0.74 0.069755
Target:  5'- uUCGaCACGACGcucgaCGGCGcGCUCGCGCUg -3'
miRNA:   3'- -AGCcGUGCUGCa----GCCGC-CGGGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.