miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 36923 0.69 0.169455
Target:  5'- -gGGCGCGugGUCGcgccggucgcuGCGGCgCCGCccGCc -3'
miRNA:   3'- agCCGUGCugCAGC-----------CGCCG-GGCG--CGa -5'
28032 5' -64.1 NC_005887.1 + 36299 0.67 0.207609
Target:  5'- cCGGUugGccgaucuGCG-CGGCGGUcgacgCCGCGCa -3'
miRNA:   3'- aGCCGugC-------UGCaGCCGCCG-----GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 36069 0.66 0.260523
Target:  5'- cCGGUGCGAaccgaCGUgCGGUGGCCUGuCGgUa -3'
miRNA:   3'- aGCCGUGCU-----GCA-GCCGCCGGGC-GCgA- -5'
28032 5' -64.1 NC_005887.1 + 36036 0.67 0.222821
Target:  5'- cUCGGCGcCGGCGa-GGCGcaaggccucgacgcGCUCGCGCa -3'
miRNA:   3'- -AGCCGU-GCUGCagCCGC--------------CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 35830 0.69 0.169455
Target:  5'- cUCGuGCGCcGCGUCGGCGuagaucaucGCCUGCGg- -3'
miRNA:   3'- -AGC-CGUGcUGCAGCCGC---------CGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 35679 0.66 0.241957
Target:  5'- gCaGCGCG-CGaUCGGCGGCCgGCuucGCg -3'
miRNA:   3'- aGcCGUGCuGC-AGCCGCCGGgCG---CGa -5'
28032 5' -64.1 NC_005887.1 + 34947 0.66 0.273535
Target:  5'- cCGGCuuCGAacUCGGCgGGCgUGCGCa -3'
miRNA:   3'- aGCCGu-GCUgcAGCCG-CCGgGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 34242 0.68 0.202913
Target:  5'- gCGGCGCcucGGCGagcgCGGCGaGCUgCGCGCg -3'
miRNA:   3'- aGCCGUG---CUGCa---GCCGC-CGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 33833 0.66 0.254208
Target:  5'- gUCGGCGCGGCGaUCgaacgcaugcagGGCGuacgaGCCUGCGg- -3'
miRNA:   3'- -AGCCGUGCUGC-AG------------CCGC-----CGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 33476 0.67 0.224506
Target:  5'- gCGcGUACGGCGUCgcgaucucgacgGGCGcGCCgGCGUUc -3'
miRNA:   3'- aGC-CGUGCUGCAG------------CCGC-CGGgCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 33417 0.67 0.236018
Target:  5'- gUCGGCGCucuGCGUCGcGCGGaUCGCGa- -3'
miRNA:   3'- -AGCCGUGc--UGCAGC-CGCCgGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 33252 0.69 0.148666
Target:  5'- -aGuaACGGCGcCGGU-GCCCGCGCUg -3'
miRNA:   3'- agCcgUGCUGCaGCCGcCGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 33206 0.72 0.089276
Target:  5'- aCGuGC-CGACGUCGGaCGGCCUgaauaccgauGCGCUu -3'
miRNA:   3'- aGC-CGuGCUGCAGCC-GCCGGG----------CGCGA- -5'
28032 5' -64.1 NC_005887.1 + 32974 0.66 0.241358
Target:  5'- gCGGCGCGAaacugcucuuguuCcUCGGUGGUCaUGCGCg -3'
miRNA:   3'- aGCCGUGCU-------------GcAGCCGCCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 32731 0.66 0.273535
Target:  5'- aCGGCgggguagcGCGGCGcucgCGuGCGcGCCgGCGCg -3'
miRNA:   3'- aGCCG--------UGCUGCa---GC-CGC-CGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 32503 0.68 0.192807
Target:  5'- gCGGCgcGCGGCGUUcaGGuuGgCCGCGCUg -3'
miRNA:   3'- aGCCG--UGCUGCAG--CCgcCgGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 32425 0.68 0.192313
Target:  5'- cCGGCgGCGAUGUggcCGGCGGCgaucaggUUGCGCa -3'
miRNA:   3'- aGCCG-UGCUGCA---GCCGCCG-------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 32290 0.68 0.192807
Target:  5'- aCGGgGCGAuCGUCGGgcCaGCCgGCGCg -3'
miRNA:   3'- aGCCgUGCU-GCAGCC--GcCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 30946 0.75 0.051433
Target:  5'- cUCGGCgguGAUGUCGGC-GCCCGCGUa -3'
miRNA:   3'- -AGCCGug-CUGCAGCCGcCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 30476 0.7 0.14102
Target:  5'- gCGGUGCG-CGaC-GCGGCCCGUGCg -3'
miRNA:   3'- aGCCGUGCuGCaGcCGCCGGGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.