miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 41944 0.68 0.192807
Target:  5'- gCGGCGCGGCGcgucuucgCGGCGcuuGCCCGUcuuuucGCa -3'
miRNA:   3'- aGCCGUGCUGCa-------GCCGC---CGGGCG------CGa -5'
28032 5' -64.1 NC_005887.1 + 41815 0.82 0.016694
Target:  5'- cCGGCGCGGCGcgCGGCGGCCgaCGCGUUc -3'
miRNA:   3'- aGCCGUGCUGCa-GCCGCCGG--GCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 41658 0.67 0.2151
Target:  5'- gUCGGCGagcagcaucgacuCGGCGagcagcagcaccuggUCGGCGGUCaUGCGCg -3'
miRNA:   3'- -AGCCGU-------------GCUGC---------------AGCCGCCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 41590 0.8 0.021538
Target:  5'- gUCGGCcaGCGGCGgcccaggugCGGCGGCCgGCGCg -3'
miRNA:   3'- -AGCCG--UGCUGCa--------GCCGCCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 40788 0.66 0.241957
Target:  5'- cCGGCGguCGAgGUucgUGGCGGCgaCGCGCc -3'
miRNA:   3'- aGCCGU--GCUgCA---GCCGCCGg-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 40753 0.69 0.169455
Target:  5'- -aGGCGauCGcCGUUGGCGcGCCgCGCGCc -3'
miRNA:   3'- agCCGU--GCuGCAGCCGC-CGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 40554 0.66 0.24802
Target:  5'- gCGGCACGuccuuCGgguaGCGGCCgaCGCGCa -3'
miRNA:   3'- aGCCGUGCu----GCagc-CGCCGG--GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 40537 0.7 0.144797
Target:  5'- gCGGCAgCGACGaCGGUcugGcGCUCGCGCa -3'
miRNA:   3'- aGCCGU-GCUGCaGCCG---C-CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 40499 0.67 0.224506
Target:  5'- gUGGCGCGACGUCGuguuCGGCauccaccaCGCGg- -3'
miRNA:   3'- aGCCGUGCUGCAGCc---GCCGg-------GCGCga -5'
28032 5' -64.1 NC_005887.1 + 40029 0.69 0.156688
Target:  5'- aUGGCGCGGCucgaGGCGGCCgGC-CUa -3'
miRNA:   3'- aGCCGUGCUGcag-CCGCCGGgCGcGA- -5'
28032 5' -64.1 NC_005887.1 + 39981 0.66 0.24802
Target:  5'- aCGGCGUGucuuCGUCGuCGGCCUGCGa- -3'
miRNA:   3'- aGCCGUGCu---GCAGCcGCCGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 39439 0.68 0.178476
Target:  5'- cUUGGCgGCGGCGUcguucgCGGCGGCCgaCGUGUc -3'
miRNA:   3'- -AGCCG-UGCUGCA------GCCGCCGG--GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 39398 0.67 0.236018
Target:  5'- cCGGCGagGAUGgucgCGGCGGUgCCGCGg- -3'
miRNA:   3'- aGCCGUg-CUGCa---GCCGCCG-GGCGCga -5'
28032 5' -64.1 NC_005887.1 + 39269 0.69 0.160844
Target:  5'- gCGGC-CGugGUCGGCGuucagcGCCUGCa-- -3'
miRNA:   3'- aGCCGuGCugCAGCCGC------CGGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 38468 0.66 0.241957
Target:  5'- cCGGCAUGGCGUCGuaugcCGGgCUGcCGCc -3'
miRNA:   3'- aGCCGUGCUGCAGCc----GCCgGGC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 38115 0.66 0.24802
Target:  5'- gCGGC-CGAgCGUCGGCGcgagcagcacGCCuuucuccugcgCGCGCUg -3'
miRNA:   3'- aGCCGuGCU-GCAGCCGC----------CGG-----------GCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 37766 0.68 0.202913
Target:  5'- aUCuGCGCGGCcugcgccUCGGCGGCuuGCuGCg -3'
miRNA:   3'- -AGcCGUGCUGc------AGCCGCCGggCG-CGa -5'
28032 5' -64.1 NC_005887.1 + 37662 0.66 0.265019
Target:  5'- aUCGGCGCGcccaucagacccucGcCGUCugcgcaGCGGUCUGCGCg -3'
miRNA:   3'- -AGCCGUGC--------------U-GCAGc-----CGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 37578 0.69 0.169455
Target:  5'- cCGGCugG-CGUCaGCuuCCCGCGCUc -3'
miRNA:   3'- aGCCGugCuGCAGcCGccGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 37304 0.7 0.146333
Target:  5'- cCGGCGCGGCcauugccgugccuucGUUGGCuucGGUCUGCGCc -3'
miRNA:   3'- aGCCGUGCUG---------------CAGCCG---CCGGGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.