Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 34242 | 0.68 | 0.202913 |
Target: 5'- gCGGCGCcucGGCGagcgCGGCGaGCUgCGCGCg -3' miRNA: 3'- aGCCGUG---CUGCa---GCCGC-CGG-GCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 29097 | 0.67 | 0.213475 |
Target: 5'- aUCGGCaACGAauCGaCGGCGGUCaGCGUc -3' miRNA: 3'- -AGCCG-UGCU--GCaGCCGCCGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 38115 | 0.66 | 0.24802 |
Target: 5'- gCGGC-CGAgCGUCGGCGcgagcagcacGCCuuucuccugcgCGCGCUg -3' miRNA: 3'- aGCCGuGCU-GCAGCCGC----------CGG-----------GCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30128 | 0.66 | 0.266965 |
Target: 5'- -aGGUuuGGCGUgaaaucCGGCGcGCCCgGCGCg -3' miRNA: 3'- agCCGugCUGCA------GCCGC-CGGG-CGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 1435 | 0.69 | 0.160844 |
Target: 5'- cUCGGUGCGcGCGcgguagcccuUCGGCGGCUCGuCGUc -3' miRNA: 3'- -AGCCGUGC-UGC----------AGCCGCCGGGC-GCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 39439 | 0.68 | 0.178476 |
Target: 5'- cUUGGCgGCGGCGUcguucgCGGCGGCCgaCGUGUc -3' miRNA: 3'- -AGCCG-UGCUGCA------GCCGCCGG--GCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 26697 | 0.67 | 0.217282 |
Target: 5'- cUCGGCGCGcaucuGCGacacggcgcccugaUCGGCGaGCCCGgcCGCc -3' miRNA: 3'- -AGCCGUGC-----UGC--------------AGCCGC-CGGGC--GCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 14567 | 0.66 | 0.266965 |
Target: 5'- gUCGGCGcCGuCGUCauGGCGcucuaccucGCCgGCGCg -3' miRNA: 3'- -AGCCGU-GCuGCAG--CCGC---------CGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 6477 | 0.68 | 0.187921 |
Target: 5'- -gGGCGCGGCGUcgCGGUGucuGCCgaGCGCa -3' miRNA: 3'- agCCGUGCUGCA--GCCGC---CGGg-CGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 13493 | 0.65 | 0.27821 |
Target: 5'- cCGGCgcaucuuuccgaaaACGAUGUCuGGCGuCCCGgGCc -3' miRNA: 3'- aGCCG--------------UGCUGCAG-CCGCcGGGCgCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 41658 | 0.67 | 0.2151 |
Target: 5'- gUCGGCGagcagcaucgacuCGGCGagcagcagcaccuggUCGGCGGUCaUGCGCg -3' miRNA: 3'- -AGCCGU-------------GCUGC---------------AGCCGCCGG-GCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 13864 | 0.68 | 0.197299 |
Target: 5'- cCGGCGCGcgucuacuuCGUCGagcugaaGCGGCCCG-GCa -3' miRNA: 3'- aGCCGUGCu--------GCAGC-------CGCCGGGCgCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 29769 | 0.67 | 0.236018 |
Target: 5'- gCGGC-CGG-GUCGGCGGacaCCauGCGCa -3' miRNA: 3'- aGCCGuGCUgCAGCCGCCg--GG--CGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 38468 | 0.66 | 0.241957 |
Target: 5'- cCGGCAUGGCGUCGuaugcCGGgCUGcCGCc -3' miRNA: 3'- aGCCGUGCUGCAGCc----GCCgGGC-GCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 25838 | 0.66 | 0.254208 |
Target: 5'- cCGGCgGCGACG-CGauCGGCCUGCGaCa -3' miRNA: 3'- aGCCG-UGCUGCaGCc-GCCGGGCGC-Ga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 37662 | 0.66 | 0.265019 |
Target: 5'- aUCGGCGCGcccaucagacccucGcCGUCugcgcaGCGGUCUGCGCg -3' miRNA: 3'- -AGCCGUGC--------------U-GCAGc-----CGCCGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 12080 | 0.69 | 0.152629 |
Target: 5'- gCGGCACGAuCGUcgcgcCGGaCGGCaaGCGCc -3' miRNA: 3'- aGCCGUGCU-GCA-----GCC-GCCGggCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 28004 | 0.69 | 0.157924 |
Target: 5'- cCGGCACGcugcuucacgaucGCcgcguucaccugcuuGUCGGCgucGGCCUGCGCUu -3' miRNA: 3'- aGCCGUGC-------------UG---------------CAGCCG---CCGGGCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 37578 | 0.69 | 0.169455 |
Target: 5'- cCGGCugG-CGUCaGCuuCCCGCGCUc -3' miRNA: 3'- aGCCGugCuGCAGcCGccGGGCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 25367 | 0.68 | 0.177096 |
Target: 5'- aUCGGCACGuagccguaGUCGagcucgccgacauuGCcGCCCGCGCg -3' miRNA: 3'- -AGCCGUGCug------CAGC--------------CGcCGGGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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