miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 23081 0.68 0.202913
Target:  5'- cUCGGUuucuuGCGUCGGCGGCaCCaaGCg -3'
miRNA:   3'- -AGCCGugc--UGCAGCCGCCG-GGcgCGa -5'
28032 5' -64.1 NC_005887.1 + 23235 0.78 0.032874
Target:  5'- aCGGCACGcgaGCGgCGGCGGUCgGCGCg -3'
miRNA:   3'- aGCCGUGC---UGCaGCCGCCGGgCGCGa -5'
28032 5' -64.1 NC_005887.1 + 23920 0.66 0.254208
Target:  5'- gCGGUcguaucgcgAUGACGUCGGCcucgcGGCguCUGCGCa -3'
miRNA:   3'- aGCCG---------UGCUGCAGCCG-----CCG--GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 24204 1.07 0.000179
Target:  5'- uUCGGCACGACGUCGGCGGCCCGCGCUu -3'
miRNA:   3'- -AGCCGUGCUGCAGCCGCCGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 24383 0.81 0.018175
Target:  5'- gCGGC-CGAUGcCGGCGaGCCCGCGCa -3'
miRNA:   3'- aGCCGuGCUGCaGCCGC-CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 24501 0.65 0.279558
Target:  5'- gUCGuCGCGAgguUGUCGGUGccccaccgauugaGCCCGUGCUc -3'
miRNA:   3'- -AGCcGUGCU---GCAGCCGC-------------CGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 25367 0.68 0.177096
Target:  5'- aUCGGCACGuagccguaGUCGagcucgccgacauuGCcGCCCGCGCg -3'
miRNA:   3'- -AGCCGUGCug------CAGC--------------CGcCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 25510 0.69 0.156688
Target:  5'- aUGGCGCGGCGggUGGCGGCauaauCGuCGCc -3'
miRNA:   3'- aGCCGUGCUGCa-GCCGCCGg----GC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 25838 0.66 0.254208
Target:  5'- cCGGCgGCGACG-CGauCGGCCUGCGaCa -3'
miRNA:   3'- aGCCG-UGCUGCaGCc-GCCGGGCGC-Ga -5'
28032 5' -64.1 NC_005887.1 + 26072 0.77 0.037826
Target:  5'- cUGGUcaGCG-CGUCaGCGGCCCGCGCg -3'
miRNA:   3'- aGCCG--UGCuGCAGcCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 26205 0.73 0.084532
Target:  5'- aCGGgGCGGCGgUGGcCGGCCUGCaGCUg -3'
miRNA:   3'- aGCCgUGCUGCaGCC-GCCGGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 26206 0.68 0.173913
Target:  5'- cUCGGCGCgccgGugGUUGGCGGggugguUgCGCGCg -3'
miRNA:   3'- -AGCCGUG----CugCAGCCGCC------GgGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 26409 0.82 0.015774
Target:  5'- gCGGCGCGugGcCGGCgcaucgauuccGGCCCGCGCg -3'
miRNA:   3'- aGCCGUGCugCaGCCG-----------CCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 26631 0.7 0.133736
Target:  5'- cUGGCGCGucagcuccuucACGcCGGCGGCggaaucauccggCCGCGCg -3'
miRNA:   3'- aGCCGUGC-----------UGCaGCCGCCG------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 26697 0.67 0.217282
Target:  5'- cUCGGCGCGcaucuGCGacacggcgcccugaUCGGCGaGCCCGgcCGCc -3'
miRNA:   3'- -AGCCGUGC-----UGC--------------AGCCGC-CGGGC--GCGa -5'
28032 5' -64.1 NC_005887.1 + 27358 0.75 0.059096
Target:  5'- gCGGCACGccuGCGgccUGcGCGGCCUGCGCg -3'
miRNA:   3'- aGCCGUGC---UGCa--GC-CGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 27406 0.68 0.173913
Target:  5'- gCGGCGCGuCGUaCGGCaGCgCGCGg- -3'
miRNA:   3'- aGCCGUGCuGCA-GCCGcCGgGCGCga -5'
28032 5' -64.1 NC_005887.1 + 28004 0.69 0.157924
Target:  5'- cCGGCACGcugcuucacgaucGCcgcguucaccugcuuGUCGGCgucGGCCUGCGCUu -3'
miRNA:   3'- aGCCGUGC-------------UG---------------CAGCCG---CCGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 28365 0.66 0.266965
Target:  5'- uUCGaGCACGaacGCGUCGaCGGCUuCGCgGCUg -3'
miRNA:   3'- -AGC-CGUGC---UGCAGCcGCCGG-GCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 29097 0.67 0.213475
Target:  5'- aUCGGCaACGAauCGaCGGCGGUCaGCGUc -3'
miRNA:   3'- -AGCCG-UGCU--GCaGCCGCCGGgCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.