Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28037 | 3' | -62.1 | NC_005887.1 | + | 20832 | 1.09 | 0.000142 |
Target: 5'- uUUCCCGGCAGCCGGCGUCGUUGCGCCg -3' miRNA: 3'- -AAGGGCCGUCGGCCGCAGCAACGCGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 37276 | 0.76 | 0.061171 |
Target: 5'- uUUCUCGGgAGUCGGUgcaGUCGUcGCGCCa -3' miRNA: 3'- -AAGGGCCgUCGGCCG---CAGCAaCGCGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 23472 | 0.75 | 0.066601 |
Target: 5'- -gCCCGGCAGCCGGCGaCGcccuugaucUGCuuGCCg -3' miRNA: 3'- aaGGGCCGUCGGCCGCaGCa--------ACG--CGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 14639 | 0.75 | 0.066601 |
Target: 5'- cUCaCGGCAGCCGGCG-CGgUGCuGCCc -3' miRNA: 3'- aAGgGCCGUCGGCCGCaGCaACG-CGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 10627 | 0.74 | 0.074566 |
Target: 5'- cUUCUCGcGgAGCCugggcGGCGUCGUUGgGCCa -3' miRNA: 3'- -AAGGGC-CgUCGG-----CCGCAGCAACgCGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 11400 | 0.74 | 0.081132 |
Target: 5'- --gCUGGCGGCCGGCGccgccaaggcaUCGUcugaGCGCCa -3' miRNA: 3'- aagGGCCGUCGGCCGC-----------AGCAa---CGCGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 20544 | 0.73 | 0.093317 |
Target: 5'- -gCCCGGCAGCgccgCGGaCGUCGUguUGaUGCCg -3' miRNA: 3'- aaGGGCCGUCG----GCC-GCAGCA--AC-GCGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 20779 | 0.72 | 0.113314 |
Target: 5'- aUgCCGGCAGUacuggaUGGCGUaaUUGCGCCg -3' miRNA: 3'- aAgGGCCGUCG------GCCGCAgcAACGCGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 1919 | 0.72 | 0.119727 |
Target: 5'- cUUUCGGCAGCCgGGCGgCGUcaUGCGUg -3' miRNA: 3'- aAGGGCCGUCGG-CCGCaGCA--ACGCGg -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 39438 | 0.71 | 0.137261 |
Target: 5'- -gCuuGGCGG-CGGCGUCGUUcGCGgCg -3' miRNA: 3'- aaGggCCGUCgGCCGCAGCAA-CGCgG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 15926 | 0.7 | 0.1614 |
Target: 5'- gUUCCGcGCGGgCCGGaaUCGaUGCGCCg -3' miRNA: 3'- aAGGGC-CGUC-GGCCgcAGCaACGCGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 37888 | 0.7 | 0.170261 |
Target: 5'- cUUCgCGGCAGCCGG-GUCGaacUGCGagaCg -3' miRNA: 3'- -AAGgGCCGUCGGCCgCAGCa--ACGCg--G- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 27762 | 0.69 | 0.179555 |
Target: 5'- aUgCCGaGCGcGCCGGCGagGUagaGCGCCa -3' miRNA: 3'- aAgGGC-CGU-CGGCCGCagCAa--CGCGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 26205 | 0.69 | 0.179555 |
Target: 5'- -aCUCGGCGcGCCGGUgguuggcgggGUgGUUGCGCg -3' miRNA: 3'- aaGGGCCGU-CGGCCG----------CAgCAACGCGg -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 29030 | 0.69 | 0.179555 |
Target: 5'- aUCCgCGauGCGGCCGGCGUUGccgaaCGCCu -3' miRNA: 3'- aAGG-GC--CGUCGGCCGCAGCaac--GCGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 13613 | 0.69 | 0.184369 |
Target: 5'- cUgCUGGCAGCgCGGCG-CGcgGCgGCCg -3' miRNA: 3'- aAgGGCCGUCG-GCCGCaGCaaCG-CGG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 32771 | 0.69 | 0.189297 |
Target: 5'- -gCCauGCAGCCGGC-UCG-UGCGCa -3' miRNA: 3'- aaGGgcCGUCGGCCGcAGCaACGCGg -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 5410 | 0.69 | 0.1995 |
Target: 5'- --aCCGGCGGgCGGCGcCGcaGCGaCCg -3' miRNA: 3'- aagGGCCGUCgGCCGCaGCaaCGC-GG- -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 28330 | 0.68 | 0.204779 |
Target: 5'- --gCCGGCGgcgcGCCGGCGguugCGgagGCGCg -3' miRNA: 3'- aagGGCCGU----CGGCCGCa---GCaa-CGCGg -5' |
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28037 | 3' | -62.1 | NC_005887.1 | + | 17332 | 0.68 | 0.204779 |
Target: 5'- --aCCGGCuGGCCGGCGgcCGccgGCGCg -3' miRNA: 3'- aagGGCCG-UCGGCCGCa-GCaa-CGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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