miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28037 3' -62.1 NC_005887.1 + 20832 1.09 0.000142
Target:  5'- uUUCCCGGCAGCCGGCGUCGUUGCGCCg -3'
miRNA:   3'- -AAGGGCCGUCGGCCGCAGCAACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 37276 0.76 0.061171
Target:  5'- uUUCUCGGgAGUCGGUgcaGUCGUcGCGCCa -3'
miRNA:   3'- -AAGGGCCgUCGGCCG---CAGCAaCGCGG- -5'
28037 3' -62.1 NC_005887.1 + 23472 0.75 0.066601
Target:  5'- -gCCCGGCAGCCGGCGaCGcccuugaucUGCuuGCCg -3'
miRNA:   3'- aaGGGCCGUCGGCCGCaGCa--------ACG--CGG- -5'
28037 3' -62.1 NC_005887.1 + 14639 0.75 0.066601
Target:  5'- cUCaCGGCAGCCGGCG-CGgUGCuGCCc -3'
miRNA:   3'- aAGgGCCGUCGGCCGCaGCaACG-CGG- -5'
28037 3' -62.1 NC_005887.1 + 10627 0.74 0.074566
Target:  5'- cUUCUCGcGgAGCCugggcGGCGUCGUUGgGCCa -3'
miRNA:   3'- -AAGGGC-CgUCGG-----CCGCAGCAACgCGG- -5'
28037 3' -62.1 NC_005887.1 + 11400 0.74 0.081132
Target:  5'- --gCUGGCGGCCGGCGccgccaaggcaUCGUcugaGCGCCa -3'
miRNA:   3'- aagGGCCGUCGGCCGC-----------AGCAa---CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 20544 0.73 0.093317
Target:  5'- -gCCCGGCAGCgccgCGGaCGUCGUguUGaUGCCg -3'
miRNA:   3'- aaGGGCCGUCG----GCC-GCAGCA--AC-GCGG- -5'
28037 3' -62.1 NC_005887.1 + 20779 0.72 0.113314
Target:  5'- aUgCCGGCAGUacuggaUGGCGUaaUUGCGCCg -3'
miRNA:   3'- aAgGGCCGUCG------GCCGCAgcAACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 1919 0.72 0.119727
Target:  5'- cUUUCGGCAGCCgGGCGgCGUcaUGCGUg -3'
miRNA:   3'- aAGGGCCGUCGG-CCGCaGCA--ACGCGg -5'
28037 3' -62.1 NC_005887.1 + 39438 0.71 0.137261
Target:  5'- -gCuuGGCGG-CGGCGUCGUUcGCGgCg -3'
miRNA:   3'- aaGggCCGUCgGCCGCAGCAA-CGCgG- -5'
28037 3' -62.1 NC_005887.1 + 15926 0.7 0.1614
Target:  5'- gUUCCGcGCGGgCCGGaaUCGaUGCGCCg -3'
miRNA:   3'- aAGGGC-CGUC-GGCCgcAGCaACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 37888 0.7 0.170261
Target:  5'- cUUCgCGGCAGCCGG-GUCGaacUGCGagaCg -3'
miRNA:   3'- -AAGgGCCGUCGGCCgCAGCa--ACGCg--G- -5'
28037 3' -62.1 NC_005887.1 + 27762 0.69 0.179555
Target:  5'- aUgCCGaGCGcGCCGGCGagGUagaGCGCCa -3'
miRNA:   3'- aAgGGC-CGU-CGGCCGCagCAa--CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 26205 0.69 0.179555
Target:  5'- -aCUCGGCGcGCCGGUgguuggcgggGUgGUUGCGCg -3'
miRNA:   3'- aaGGGCCGU-CGGCCG----------CAgCAACGCGg -5'
28037 3' -62.1 NC_005887.1 + 29030 0.69 0.179555
Target:  5'- aUCCgCGauGCGGCCGGCGUUGccgaaCGCCu -3'
miRNA:   3'- aAGG-GC--CGUCGGCCGCAGCaac--GCGG- -5'
28037 3' -62.1 NC_005887.1 + 13613 0.69 0.184369
Target:  5'- cUgCUGGCAGCgCGGCG-CGcgGCgGCCg -3'
miRNA:   3'- aAgGGCCGUCG-GCCGCaGCaaCG-CGG- -5'
28037 3' -62.1 NC_005887.1 + 32771 0.69 0.189297
Target:  5'- -gCCauGCAGCCGGC-UCG-UGCGCa -3'
miRNA:   3'- aaGGgcCGUCGGCCGcAGCaACGCGg -5'
28037 3' -62.1 NC_005887.1 + 5410 0.69 0.1995
Target:  5'- --aCCGGCGGgCGGCGcCGcaGCGaCCg -3'
miRNA:   3'- aagGGCCGUCgGCCGCaGCaaCGC-GG- -5'
28037 3' -62.1 NC_005887.1 + 28330 0.68 0.204779
Target:  5'- --gCCGGCGgcgcGCCGGCGguugCGgagGCGCg -3'
miRNA:   3'- aagGGCCGU----CGGCCGCa---GCaa-CGCGg -5'
28037 3' -62.1 NC_005887.1 + 17332 0.68 0.204779
Target:  5'- --aCCGGCuGGCCGGCGgcCGccgGCGCg -3'
miRNA:   3'- aagGGCCG-UCGGCCGCa-GCaa-CGCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.