miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28037 3' -62.1 NC_005887.1 + 31138 0.67 0.267114
Target:  5'- -gCCgGGCAgGCCGuGCGcauacgccugcaccaUCGUgucGCGCCa -3'
miRNA:   3'- aaGGgCCGU-CGGC-CGC---------------AGCAa--CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 41610 0.68 0.227117
Target:  5'- -gUgCGGCGGCCGGCGcggccCGUgaggaucugcUGCGUCu -3'
miRNA:   3'- aaGgGCCGUCGGCCGCa----GCA----------ACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 11302 0.68 0.233015
Target:  5'- cUCgCaGCGGCCGGC-UCGgcagcgaGCGCCg -3'
miRNA:   3'- aAGgGcCGUCGGCCGcAGCaa-----CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 11776 0.68 0.23541
Target:  5'- aUCUCGGCGGCguccucgcugcucggCGGCGUCGguucguaCGCUa -3'
miRNA:   3'- aAGGGCCGUCG---------------GCCGCAGCaac----GCGG- -5'
28037 3' -62.1 NC_005887.1 + 11871 0.67 0.245197
Target:  5'- -gCUCGGCGGUCuuuCGUCGUUcggcaGCGCCg -3'
miRNA:   3'- aaGGGCCGUCGGcc-GCAGCAA-----CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 41949 0.67 0.245197
Target:  5'- -gCCCGGCGuGCUcGCGUgGUgcgUGCGCg -3'
miRNA:   3'- aaGGGCCGU-CGGcCGCAgCA---ACGCGg -5'
28037 3' -62.1 NC_005887.1 + 7285 0.67 0.250849
Target:  5'- -cCCCGGCcGCCcgcugugGGuCGUCGUguCGCCg -3'
miRNA:   3'- aaGGGCCGuCGG-------CC-GCAGCAacGCGG- -5'
28037 3' -62.1 NC_005887.1 + 37928 0.67 0.251484
Target:  5'- -cCCCaGCAGgCGcGCGUUGUUGaaucaGCCc -3'
miRNA:   3'- aaGGGcCGUCgGC-CGCAGCAACg----CGG- -5'
28037 3' -62.1 NC_005887.1 + 21271 0.67 0.264456
Target:  5'- -aCCgCGGCGG-CGGCGUa--UGCGCUg -3'
miRNA:   3'- aaGG-GCCGUCgGCCGCAgcaACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 32424 0.68 0.227117
Target:  5'- --gCCGGCggcgauguGGCCGGCGgcgaucagGUUGCGCa -3'
miRNA:   3'- aagGGCCG--------UCGGCCGCag------CAACGCGg -5'
28037 3' -62.1 NC_005887.1 + 5410 0.69 0.1995
Target:  5'- --aCCGGCGGgCGGCGcCGcaGCGaCCg -3'
miRNA:   3'- aagGGCCGUCgGCCGCaGCaaCGC-GG- -5'
28037 3' -62.1 NC_005887.1 + 32771 0.69 0.189297
Target:  5'- -gCCauGCAGCCGGC-UCG-UGCGCa -3'
miRNA:   3'- aaGGgcCGUCGGCCGcAGCaACGCGg -5'
28037 3' -62.1 NC_005887.1 + 23472 0.75 0.066601
Target:  5'- -gCCCGGCAGCCGGCGaCGcccuugaucUGCuuGCCg -3'
miRNA:   3'- aaGGGCCGUCGGCCGCaGCa--------ACG--CGG- -5'
28037 3' -62.1 NC_005887.1 + 14639 0.75 0.066601
Target:  5'- cUCaCGGCAGCCGGCG-CGgUGCuGCCc -3'
miRNA:   3'- aAGgGCCGUCGGCCGCaGCaACG-CGG- -5'
28037 3' -62.1 NC_005887.1 + 10627 0.74 0.074566
Target:  5'- cUUCUCGcGgAGCCugggcGGCGUCGUUGgGCCa -3'
miRNA:   3'- -AAGGGC-CgUCGG-----CCGCAGCAACgCGG- -5'
28037 3' -62.1 NC_005887.1 + 11400 0.74 0.081132
Target:  5'- --gCUGGCGGCCGGCGccgccaaggcaUCGUcugaGCGCCa -3'
miRNA:   3'- aagGGCCGUCGGCCGC-----------AGCAa---CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 1919 0.72 0.119727
Target:  5'- cUUUCGGCAGCCgGGCGgCGUcaUGCGUg -3'
miRNA:   3'- aAGGGCCGUCGG-CCGCaGCA--ACGCGg -5'
28037 3' -62.1 NC_005887.1 + 15926 0.7 0.1614
Target:  5'- gUUCCGcGCGGgCCGGaaUCGaUGCGCCg -3'
miRNA:   3'- aAGGGC-CGUC-GGCCgcAGCaACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 27762 0.69 0.179555
Target:  5'- aUgCCGaGCGcGCCGGCGagGUagaGCGCCa -3'
miRNA:   3'- aAgGGC-CGU-CGGCCGCagCAa--CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 13613 0.69 0.184369
Target:  5'- cUgCUGGCAGCgCGGCG-CGcgGCgGCCg -3'
miRNA:   3'- aAgGGCCGUCG-GCCGCaGCaaCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.