miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28037 3' -62.1 NC_005887.1 + 31138 0.67 0.267114
Target:  5'- -gCCgGGCAgGCCGuGCGcauacgccugcaccaUCGUgucGCGCCa -3'
miRNA:   3'- aaGGgCCGU-CGGC-CGC---------------AGCAa--CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 21271 0.67 0.264456
Target:  5'- -aCCgCGGCGG-CGGCGUa--UGCGCUg -3'
miRNA:   3'- aaGG-GCCGUCgGCCGCAgcaACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 29447 0.67 0.251484
Target:  5'- --aCCGGCGuGCUGGC-UCGccGUGCCg -3'
miRNA:   3'- aagGGCCGU-CGGCCGcAGCaaCGCGG- -5'
28037 3' -62.1 NC_005887.1 + 37928 0.67 0.251484
Target:  5'- -cCCCaGCAGgCGcGCGUUGUUGaaucaGCCc -3'
miRNA:   3'- aaGGGcCGUCgGC-CGCAGCAACg----CGG- -5'
28037 3' -62.1 NC_005887.1 + 7285 0.67 0.250849
Target:  5'- -cCCCGGCcGCCcgcugugGGuCGUCGUguCGCCg -3'
miRNA:   3'- aaGGGCCGuCGG-------CC-GCAGCAacGCGG- -5'
28037 3' -62.1 NC_005887.1 + 15092 0.67 0.245197
Target:  5'- aUCaUUGGCgacgcgGGCCGGCGcgcgaugcaGUUGCGCCg -3'
miRNA:   3'- aAG-GGCCG------UCGGCCGCag-------CAACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 32864 0.67 0.245197
Target:  5'- aUgCCGGgguCGGCCGG-GUCGUUcGuCGCCa -3'
miRNA:   3'- aAgGGCC---GUCGGCCgCAGCAA-C-GCGG- -5'
28037 3' -62.1 NC_005887.1 + 1660 0.67 0.245197
Target:  5'- cUCCUGcCAGCCGuGCG-CGc-GCGCCa -3'
miRNA:   3'- aAGGGCcGUCGGC-CGCaGCaaCGCGG- -5'
28037 3' -62.1 NC_005887.1 + 41949 0.67 0.245197
Target:  5'- -gCCCGGCGuGCUcGCGUgGUgcgUGCGCg -3'
miRNA:   3'- aaGGGCCGU-CGGcCGCAgCA---ACGCGg -5'
28037 3' -62.1 NC_005887.1 + 11871 0.67 0.245197
Target:  5'- -gCUCGGCGGUCuuuCGUCGUUcggcaGCGCCg -3'
miRNA:   3'- aaGGGCCGUCGGcc-GCAGCAA-----CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 27381 0.67 0.239041
Target:  5'- -gCCUGcGCGGCguaGGCGUCGagUUGCGgCg -3'
miRNA:   3'- aaGGGC-CGUCGg--CCGCAGC--AACGCgG- -5'
28037 3' -62.1 NC_005887.1 + 7705 0.67 0.239041
Target:  5'- --aCCGGCaAGCCGGCGcgccUCGUcGaCGCg -3'
miRNA:   3'- aagGGCCG-UCGGCCGC----AGCAaC-GCGg -5'
28037 3' -62.1 NC_005887.1 + 11776 0.68 0.23541
Target:  5'- aUCUCGGCGGCguccucgcugcucggCGGCGUCGguucguaCGCUa -3'
miRNA:   3'- aAGGGCCGUCG---------------GCCGCAGCaac----GCGG- -5'
28037 3' -62.1 NC_005887.1 + 11302 0.68 0.233015
Target:  5'- cUCgCaGCGGCCGGC-UCGgcagcgaGCGCCg -3'
miRNA:   3'- aAGgGcCGUCGGCCGcAGCaa-----CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 32424 0.68 0.227117
Target:  5'- --gCCGGCggcgauguGGCCGGCGgcgaucagGUUGCGCa -3'
miRNA:   3'- aagGGCCG--------UCGGCCGCag------CAACGCGg -5'
28037 3' -62.1 NC_005887.1 + 41610 0.68 0.227117
Target:  5'- -gUgCGGCGGCCGGCGcggccCGUgaggaucugcUGCGUCu -3'
miRNA:   3'- aaGgGCCGUCGGCCGCa----GCA----------ACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 1583 0.68 0.227117
Target:  5'- --gCCGGCucGgCGGCGcgCGgcGCGCCa -3'
miRNA:   3'- aagGGCCGu-CgGCCGCa-GCaaCGCGG- -5'
28037 3' -62.1 NC_005887.1 + 26028 0.68 0.227117
Target:  5'- gUUCgCGGCgaccucgaacaGGCCGGCGUCc-UGCGUg -3'
miRNA:   3'- -AAGgGCCG-----------UCGGCCGCAGcaACGCGg -5'
28037 3' -62.1 NC_005887.1 + 6177 0.68 0.221345
Target:  5'- aUCCCGGuCGGCaCGGUGac---GCGCCg -3'
miRNA:   3'- aAGGGCC-GUCG-GCCGCagcaaCGCGG- -5'
28037 3' -62.1 NC_005887.1 + 28030 0.68 0.2157
Target:  5'- gUUCaCCuGCuuGUCGGCGUCGgccUGCGCUu -3'
miRNA:   3'- -AAG-GGcCGu-CGGCCGCAGCa--ACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.